Related papers: On an Algorithm for Comparing the Chromatic Symmet…
This paper presents the novel `uniqueness tree' algorithm, as one possible method for determining whether two finite, undirected graphs are isomorphic. We prove that the algorithm has polynomial time complexity in the worst case, and that…
Deciding whether there is a single tree -a supertree- that summarizes the evolutionary information in a collection of unrooted trees is a fundamental problem in phylogenetics. We consider two versions of this question: agreement and…
The recently introduced graph parameter tree-cut width plays a similar role with respect to immersions as the graph parameter treewidth plays with respect to minors. In this paper, we provide the first algorithmic applications of tree-cut…
We define an algorithm k which takes a connected graph G on a totally ordered vertex set and returns an increasing tree R (which is not necessarily a subtree of G). We characterize the set of graphs G such that k(G)=R. Because this set has…
We classify the trees on $n$ vertices with the maximum and the minimum number of certain generalized colorings, including conflict-free, odd, non-monochromatic, star, and star rainbow vertex colorings. We also extend a result of Cutler and…
A star edge coloring of a graph $G$ is a proper edge coloring of $G$ such that every path and cycle of length four in $G$ uses at least three different colors. The star chromatic index of a graph $G$, is the smallest integer $k$ for which…
The probability that two randomly selected phylogenetic trees of the same size are isomorphic is found to be asymptotic to a decreasing exponential modulated by a polynomial factor. The number of symmetrical nodes in a random phylogenetic…
Merge trees are fundamental structures in topological data analysis. Interleaving distance is a widely accepted metric for comparing merge trees, with applications in visualization and scientific computing. While a greedy algorithm exists…
Individualization-Refinement (IR) algorithms form the standard method and currently the only practical method for symmetry computations of graphs and combinatorial objects in general. Through backtracking, on each graph an IR-algorithm…
We define a class of bipartite graphs that correspond naturally with Ferrers diagrams. We give expressions for the number of spanning trees, the number of Hamiltonian paths when applicable, the chromatic polynomial, and the chromatic…
The subtree prune-and-regraft (SPR) distance metric is a fundamental way of comparing evolutionary trees. It has wide-ranging applications, such as to study lateral genetic transfer, viral recombination, and Markov chain Monte Carlo…
Place value numbers, such as the binary or decimal numbers can be represented by the end vertices (leaf or pendant vertices) of rooted symmetrical trees. Numbers that consist of at most a fixed number of digits are represented by vertices…
A graph $G$ is asymmetrizable if it has a set of vertices whose setwise stablizer only consists of the identity automorphism. The motion $m$ of a graph is the minimum number of vertices moved by any non-identity automorphism. It is known…
While the game chromatic number of a forest is known to be at most 4, no simple criteria are known for determining the game chromatic number of a forest. We first state necessary and sufficient conditions for forests with game chromatic…
We look for partition theorems for large subtrees for suitable uncountable trees and colourings. We concentrate on sub-trees of $^{\kappa \ge} 2$ expanded by a well ordering of each level. Unlike earlier works, we do not ask the embedding…
Pr\"{u}fer codes provide an encoding scheme for representing a vertex-labeled tree on $n$ vertices with a string of length $n-2$. Indeed, two labeled trees are isomorphic if and only if their Pr\"{u}fer codes are identical, and this…
Random Forest (RF) is a powerful ensemble method for classification and regression tasks. It consists of decision trees set. Although, a single tree is well interpretable for human, the ensemble of trees is a black-box model. The popular…
A $b$-coloring of a graph is a proper vertex coloring such that each color class contains a vertex that sees all other colors in its neighborhood. The $b$-coloring problem, in which the task is to decide whether a graph admits a…
We study the conflict-free connection coloring of trees, which is also the conflict-free coloring of the so-called edge-path hypergraphs of trees. We first prove that for a tree $T$ of order $n$, $cfc(T)\geq cfc(P_n)=\lceil \log_{2}…
Let $G$ be a finite or infinite graph and $m(G)$ the minimum number of vertices moved by the non-identity automorphisms of $G$. We are interested in bounds on the supremum $\Delta(G)$ of the degrees of the vertices of $G$ that assure the…