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The complex dynamics of intracellular calcium regulates cellular responses to information encoded in extracellular signals. Here, we study the encoding of these external signals in the context of the Li-Rinzel model. We show that by control…

Cell Behavior · Quantitative Biology 2008-06-17 Maurizio De Pitta , Vladislav Volman , Herbert Levine , Giovanni Pioggia , Danilo De Rossi , Eshel Ben-Jacob

Recent years have witnessed an increasing interest in neuron-glia communication. This interest stems from the realization that glia participates in cognitive functions and information processing and is involved in many brain disorders and…

Neurons and Cognition · Quantitative Biology 2009-12-17 Maurizio De Pitta` , Mati Goldberg , Vladislav Volman , Hugues Berry , Eshel Ben-Jacob

In this letter we present the results of a simple model for intercellular communication via calcium oscillations, motivated in part by a recent experimental study. The model describes two cells (a "donor" and "sensor") whose intracellular…

Biological Physics · Physics 2007-05-23 M. E. Gracheva , J. D. Gunton

In the brain, both neurons and glial cells work in conjunction with each other during information processing. Stimulation of neurons can cause calcium oscillations in astrocytes which in turn can affect neuronal calcium dynamics. The…

Neurons and Cognition · Quantitative Biology 2023-08-16 Bhanu Sharma , Spandan Kumar , Subhendu Ghosh , Vikram Singh

Most of the functions performed by astrocytes in brain information processing are related to calcium waves. Experimental studies involving calcium waves present discrepant results, leading to gaps in the full understanding of the functions…

Biological Physics · Physics 2021-07-09 Thais Appelt Peres Bartiê , Leonel Teixeira Pinto

At tripartite synapses, astrocytes are in close contact with neurons and contribute to various functions, from synaptic transmission, maintenance of ion homeostasis and glutamate uptake to metabolism. However, disentangling the precise…

Biological Physics · Physics 2024-04-23 Kerstin Lenk , Audrey Denizot , Barbara Genocchi , Ippa Seppälä , Marsa Taheri , Suhita Nadkarni

We present a simple biophysical model for the coupling between synaptic transmission and the local calcium concentration on an enveloping astrocytic domain. This interaction enables the astrocyte to modulate the information flow from…

Neurons and Cognition · Quantitative Biology 2007-05-23 Vladislav Volman , Eshel Ben-Jacob , Herbert Levine

Many cells use calcium signalling to carry information from the extracellular side of the plasma membrane to targets in their interior. Since virtually all cells employ a network of biochemical reactions for Ca2+ signalling, much effort has…

Neurons and Cognition · Quantitative Biology 2009-12-17 Maurizio De Pitta` , Vladislav Volman , Herbert Levine , Eshel Ben-Jacob

G protein-coupled receptors (GPCRs) represent a diverse and vital family of membrane proteins that mediate intracellular signaling in response to extracellular stimuli, playing critical roles in physiology and disease. Traditionally…

Biological Physics · Physics 2025-06-04 Aakanksha J Shetty , Alexei Sirbu , Paolo Annibale

Collective sensing by interacting cells is observed in a variety of biological systems, and yet a quantitative understanding of how sensory information is collectively encoded is lacking. Here we investigate the ATP-induced calcium dynamics…

Cell Behavior · Quantitative Biology 2017-09-20 Garrett D Potter , Tommy A Byrd , Andrew Mugler , Bo Sun

Eukaryotic cells transmit extracellular signal information to cellular interiors through the formation of a ternary complex made up of a ligand (or agonist), G-protein, and G-protein coupled receptor (GPCR). Previously formalized theories…

Molecular Networks · Quantitative Biology 2020-09-24 Masaki Watabe , Hideaki Yoshimura , Satya N. V. Arjunan , Kazunari Kaizu , Koichi Takahashi

Most of the calcium in the body is stored in bone. The rest is stored elsewhere, and calcium signalling is one of the most important mechanisms of information propagation in the body. Yet, many questions remain open. In this work, we…

Dynamical Systems · Mathematics 2017-03-03 Katerina Kaouri , Philip K. Maini , S. Jonathan Chapman

Epilepsy is a neurological disorder with recurrent seizures of complexity and randomness. Until now, the mechanism of epileptic randomness has not been fully elucidated. Inspired by the recent finding that astrocyte GTPase-activating…

Neurons and Cognition · Quantitative Biology 2024-06-19 JiaJia Li , Peihua Feng , Liang Zhao , Junying Chen , Mengmeng Du , Yangyang Yu , Jian Song , Ying Wu

Deciphering the complex interactions between neurotransmission and astrocytic $Ca^{2+}$ elevations is a target promising a comprehensive understanding of brain function. While the astrocytic response to excitatory synaptic activity has been…

Cell Behavior · Quantitative Biology 2019-03-19 Ioannis E. Polykretis , Vladimir A. Ivanov , Konstantinos P. Michmizos

G-protein coupled receptors (GPCRs), a major gatekeeper of extracellular signals on plasma membrane, are unarguably one of the most important therapeutic targets. Given the recent discoveries of allosteric modulations, an allosteric wiring…

Biomolecules · Quantitative Biology 2013-10-16 Yoonji Lee , Sun Choi , Changbong Hyeon

G-protein-coupled receptors (GPCRs) are central to cellular information processing, yet the physical principles governing their switching behavior remain incompletely understood. We present a first principles theoretical framework, grounded…

Molecular Networks · Quantitative Biology 2026-01-21 Roger D. Jones , Achille Giacometti , Alan M. Jones

We study the dynamics of intracellular calcium oscillations in the presence of proteins that bind calcium on multiple sites and that are generally believed to act as passive calcium buffers in cells. We find that multisite calcium-binding…

Subcellular Processes · Quantitative Biology 2015-05-14 Roberto Chignola , Alessio Del Fabbro , Edoardo Milotti

In pancreatic $\beta$-cells, calcium oscillation signal is the core part of glucose-stimulated insulin secretion. Intracellular calcium concentration oscillates in response to the intake of glucose, which triggers the exocytosis of insulin…

Cell Behavior · Quantitative Biology 2018-11-30 Yunsheng Sun , Congjian Ni , Yingda Ge , Hong Qian , Qi Ouyang , Fangting Li

Clusters of IP3 receptor channels in the membranes of the endoplasmic reticulum (ER) of many non-excitable cells release calcium ions in a cooperative manner giving rise to dynamical patterns such as Ca2+ puffs, waves, and oscillations that…

Subcellular Processes · Quantitative Biology 2018-10-17 Svitlana Braichenko , Atul Bhaskar , Srinandan Dasmahapatra

We discuss the implementation of a multiscale biophysico-chemical model able to cope with the main mechanisms underlying cumulative exocytosis in cells. The model is based on a diffusion equation in the presence of external forces that…

Subcellular Processes · Quantitative Biology 2016-01-06 Aldo Ledesma Duran , I. Santamaria-Holek
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