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Networks are widely used in the biological, physical, and social sciences as a concise mathematical representation of the topology of systems of interacting components. Understanding the structure of these networks is one of the outstanding…

Data Analysis, Statistics and Probability · Physics 2007-06-21 M. E. J. Newman , E. A. Leicht

The structure of a bipartite interaction network can be described by providing a clustering for each of the two types of nodes. Such clusterings are outputted by fitting a Latent Block Model (LBM) on an observed network that comes from a…

Methodology · Statistics 2025-03-19 Emre Anakok , Pierre Barbillon , Colin Fontaine , Elisa Thebault

Self-organisation lies at the core of fundamental but still unresolved scientific questions, and holds the promise of de-centralised paradigms crucial for future technological developments. While self-organising processes have been…

Adaptation and Self-Organizing Systems · Physics 2019-04-16 Fernando Rosas , Pedro A. M. Mediano , Martin Ugarte , Henrik J. Jensen

Unknown node attributes in complex networks may introduce community structures that are important to distinguish from those driven by known attributes. We propose a block-corrected modularity that discounts given block structures present in…

Physics and Society · Physics 2025-08-04 Hasti Narimanzadeh , Takayuki Hiraoka , Mikko Kivelä

Networks describing the interaction of the elements that constitute a complex system grow and develop via a number of different mechanisms, such as the addition and deletion of nodes, the addition and deletion of edges, as well as the…

Molecular Networks · Quantitative Biology 2010-06-09 Arend Hintze , Christoph Adami

The increasing volume of ecologically and biologically relevant data has revealed a wide collection of emergent patterns in living systems. Analyzing different datasets, ranging from metabolic gene-regulatory to species interaction…

Physics and Society · Physics 2019-12-13 Daniel M. Busiello , Samir Suweis , Jorge Hidalgo , Amos Maritan

Bipartite networks provide an insightful representation of many systems, ranging from mutualistic networks of species interactions to investment networks in finance. The analysis of their topological structures has revealed the ubiquitous…

Physics and Society · Physics 2018-07-20 Mika J. Straka , Guido Caldarelli , Tiziano Squartini , Fabio Saracco

A number of recent studies have focused on the statistical properties of networked systems such as social networks and the World-Wide Web. Researchers have concentrated particularly on a few properties which seem to be common to many…

Statistical Mechanics · Physics 2009-11-07 Michelle Girvan , M. E. J. Newman

Using an intuitive concept of what constitutes a meaningful community, a novel metric is formulated for detecting non-overlapping communities in undirected, weighted heterogeneous networks. This metric, modularity density, is shown to be…

Social and Information Networks · Computer Science 2019-08-23 Swathi M. Mula , Gerardo Veltri

Graphs representing real world systems may be studied from their underlying community structure. A community in a network is an intuitive idea for which there is no consensus on its objective mathematical definition. The most used metric in…

Social and Information Networks · Computer Science 2022-06-29 Daniel Gamermann , José Antônio Pellizaro

Overlapping communities are key characteristics of the structure and function analysis of complex networks. Shared or overlapping nodes within overlapping communities can form either subcommunities or act as intersections between larger…

Social and Information Networks · Computer Science 2025-12-19 Vesa Kuikka , Kosti Koistinen , Kimmo K Kaski

We investigate the relationship between the nested organization of mutualistic systems and their robustness against the extinction of species. We establish that a nested pattern of contacts is the best possible one as far as robustness is…

Populations and Evolution · Quantitative Biology 2007-09-20 E. Burgos , H. Ceva , R. Perazzo , M. Devoto , D. Medan , M. Zimmermann , A. M. Delbue

Networks are a fundamental tool for understanding and modeling complex systems in physics, biology, neuroscience, engineering, and social science. Many networks are known to exhibit rich, lower-order connectivity patterns that can be…

Social and Information Networks · Computer Science 2018-01-08 Austin R. Benson , David F. Gleich , Jure Leskovec

Our ability to control complex systems is a fundamental challenge of contemporary science. Recently introduced tools to identify the driver nodes, nodes through which we can achieve full control, predict the existence of multiple control…

The community structure of a complex network can be determined by finding the partitioning of its nodes that maximizes modularity. Many of the proposed algorithms for doing this work by recursively bisecting the network. We show that this…

Computers and Society · Computer Science 2015-05-13 Yudong Sun , Bogdan Danila , Kresimir Josic , Kevin E. Bassler

Network clustering reveals the organization of a network or corresponding complex system with elements represented as vertices and interactions as edges in a (directed, weighted) graph. Although the notion of clustering can be somewhat…

Machine Learning · Statistics 2017-11-15 Yongjin Park , Joel S. Bader

Inspired from human cognition, machine learning systems are gradually revealing advantages of sparser and more modular architectures. Recent work demonstrates that not only do some modular architectures generalize well, but they also lead…

Machine Learning · Computer Science 2022-06-07 Sarthak Mittal , Yoshua Bengio , Guillaume Lajoie

Upon a matrix representation of a binary bipartite network, via the permutation invariance, a coupling geometry is computed to approximate the minimum energy macrostate of a network's system. Such a macrostate is supposed to constitute the…

Applications · Statistics 2018-02-02 Jiahui Guan , Hsieh Fushing

Community detection in multi-layer networks has emerged as a crucial area of modern network analysis. However, conventional approaches often assume that nodes belong exclusively to a single community, which fails to capture the complex…

Social and Information Networks · Computer Science 2024-09-13 Huan Qing

Networks play a prominent role in the study of complex systems of interacting entities in biology, sociology, and economics. Despite this diversity, we demonstrate here that a statistical model decomposing networks into matching and…

Physics and Society · Physics 2016-02-05 Rudolf P. Rohr , Russel E. Naisbit , Christian Mazza , Louix-Félix Bersier