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Phylogenetic inference, the task of reconstructing how related sequences evolved from common ancestors, is a central objective in evolutionary genomics. The current state-of-the-art methods exploit probabilistic models of sequence evolution…

Populations and Evolution · Quantitative Biology 2026-02-19 Luc Blassel , Noémie Sauvage , Pierre Barrat-Charlaix , Bastien Boussau , Nicolas Lartillot , Laurent Jacob

Statistical information is ubiquitous but drawing valid conclusions from it is prohibitively hard. We explain how knowledge graph embeddings can be used to approximate probabilistic inference efficiently using the example of Statistical EL…

Artificial Intelligence · Computer Science 2024-07-17 Yuqicheng Zhu , Nico Potyka , Bo Xiong , Trung-Kien Tran , Mojtaba Nayyeri , Evgeny Kharlamov , Steffen Staab

We study asymptotic expansions in free probability. In a class of classical limit theorems Edgeworth expansion can be obtained via a general approach using sequences of "influence" functions of individual random elements described by…

Probability · Mathematics 2015-02-05 F. Götze , A. Reshetenko

This paper concerns the use of the expectation-maximisation (EM) algorithm for inference in partially observed diffusion processes. In this context, a well known problem is that all except a few diffusion processes lack closed-form…

Statistics Theory · Mathematics 2010-08-18 Jimmy Olsson , Jonas Ströjby

We propose an iterative estimating equations procedure for analysis of longitudinal data. We show that, under very mild conditions, the probability that the procedure converges at an exponential rate tends to one as the sample size…

Statistics Theory · Mathematics 2007-12-18 Jiming Jiang , Yihui Luan , You-Gan Wang

Approximate Bayesian Computation (ABC) provides methods for Bayesian inference in simulation-based stochastic models which do not permit tractable likelihoods. We present a new ABC method which uses probabilistic neural emulator networks to…

Machine Learning · Statistics 2019-05-21 Jan-Matthis Lueckmann , Giacomo Bassetto , Theofanis Karaletsos , Jakob H. Macke

Motivated by parametric models for which the likelihood is analytically unavailable, numerically unstable, or prohibitively expensive to compute or optimize, we develop a prior- and likelihood-free framework for fully probabilistic…

Methodology · Statistics 2026-03-17 Leonardo Cella , Emily C. Hector

`Distribution regression' refers to the situation where a response Y depends on a covariate P where P is a probability distribution. The model is Y=f(P) + mu where f is an unknown regression function and mu is a random error. Typically, we…

Machine Learning · Statistics 2013-02-04 Barnabas Poczos , Alessandro Rinaldo , Aarti Singh , Larry Wasserman

Likelihood-free Bayesian inference algorithms are popular methods for calibrating the parameters of complex, stochastic models, required when the likelihood of the observed data is intractable. These algorithms characteristically rely…

Computation · Statistics 2021-12-23 Thomas P Prescott , David J Warne , Ruth E Baker

Variational message passing (VMP), belief propagation (BP) and expectation propagation (EP) have found their wide applications in complex statistical signal processing problems. In addition to viewing them as a class of algorithms operating…

Information Theory · Computer Science 2021-01-20 Dan Zhang , Xiaohang Song , Wenjin Wang , Gerhard Fettweis , Xiqi Gao

Variational inference is a powerful tool for approximate inference, and it has been recently applied for representation learning with deep generative models. We develop the variational Gaussian process (VGP), a Bayesian nonparametric…

Machine Learning · Statistics 2016-04-19 Dustin Tran , Rajesh Ranganath , David M. Blei

Kappa distributions are widely used in space plasma physics to model velocity distribution functions with heavy tails. Parameter estimation in these distributions is, however, complicated by the fact that the kappa distribution does not…

Methodology · Statistics 2026-05-25 Leonardo Herrera-Fuenzalida , Sergio Davis

In this paper we propose a smoothing turbo equalizer based on the expectation propagation (EP) algorithm with quite improved performance compared to the Kalman smoother, at similar complexity. In scenarios where high-order modulations…

Signal Processing · Electrical Eng. & Systems 2019-02-05 Irene Santos , Juan José Murillo-Fuentes , Eva Arias-de-Reyna

This letter deals with the application of the expectation propagation (EP) algorithm to turbo equalization. The EP has been successfully applied to obtain either a better approximation at the output of the equalizer or at the output of the…

Signal Processing · Electrical Eng. & Systems 2020-02-19 Irene Santos , Juan José Murillo-Fuentes , Eva Arias-de-Reyna

In this paper we develop non-asymptotic Gaussian approximation results for the sampling distribution of suprema of empirical processes when the indexing function class $\mathcal{F}_n$ varies with the sample size $n$ and may not be Donsker.…

Statistics Theory · Mathematics 2023-09-06 Alexander Giessing

Tempering is a popular tool in Bayesian computation, being used to transform a posterior distribution $p_1$ into a reference distribution $p_0$ that is more easily approximated. Several algorithms exist that start by approximating $p_0$ and…

Computation · Statistics 2025-09-16 Mengxin Xi , Zheyang Shen , Marina Riabiz , Nicolas Chopin , Chris J. Oates

In this work, with combined belief propagation (BP), mean field (MF) and expectation propagation (EP), an iterative receiver is designed for joint phase noise (PN) estimation, equalization and decoding in a coded communication system. The…

Information Theory · Computer Science 2016-09-07 Wei Wang , Zhongyong Wang , Chuanzong Zhang , Qinghua Guo , Peng Sun , Xingye Wang

Bayesian inference on non-Gaussian data is often non-analytic and requires computationally expensive approximations such as sampling or variational inference. We propose an approximate inference framework primarily designed to be…

Machine Learning · Computer Science 2022-10-12 Marius Hobbhahn , Philipp Hennig

In this paper, we introduce a flexible and widely applicable nonparametric entropy-based testing procedure that can be used to assess the validity of simple hypotheses about a specific parametric population distribution. The testing…

Econometrics · Economics 2022-01-19 Ron Mittelhammer , George Judge , Miguel Henry

We study several bayesian inference problems for irreversible stochastic epidemic models on networks from a statistical physics viewpoint. We derive equations which allow to accurately compute the posterior distribution of the time…

Quantitative Methods · Quantitative Biology 2014-03-28 Fabrizio Altarelli , Alfredo Braunstein , Luca Dall'Asta , Alejandro Lage-Castellanos , Riccardo Zecchina
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