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Structural relationships among proteins are important in the study of their evolution as well as in drug design and development. The protein 3D structure has been shown to be effective with respect to classifying proteins. Prior work has…

Biomolecules · Quantitative Biology 2016-02-26 James DeFelice , Vicente M. Reyes

Many algorithms have been parallelized successfully on the Intel Xeon Phi coprocessor, especially those with regular, balanced, and predictable data access patterns and instruction flows. Irregular and unbalanced algorithms are harder to…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-07-17 S. Ali Mirsoleimani , Aske Plaat , Jaap van den Herik , Jos Vermaseren

The emerging class of instance-optimized systems has shown potential to achieve high performance by specializing to a specific data and query workloads. Particularly, Machine Learning (ML) techniques have been applied successfully to build…

Databases · Computer Science 2022-07-04 Abdullah-Al-Mamun , Ch. Md. Rakin Haider , Jianguo Wang , Walid G. Aref

Breadth-first search (BFS) is a fundamental graph algorithm that presents significant challenges for parallel implementation due to irregular memory access patterns, load imbalance and synchronization overhead. In this paper, we introduce a…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-04 Marati Bhaskar , Raghavendra Kanakagiri

Emerging technologies present opportunities for system designers to meet the challenges presented by competing trends of big data analytics and limitations on CMOS scaling. Specifically, memristors are an emerging high-density technology…

Emerging Technologies · Computer Science 2016-01-21 Yang Liu , Chris Dwyer , Alvin R. Lebeck

Data intensive applications on clusters often require requests quickly be sent to the node managing the desired data. In many applications, one must look through a sorted tree structure to determine the responsible node for accessing or…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-05-23 Xiaoqin Ma , Gene Cooperman

Non-relational database systems (NRDS), such as graph, document, key-value, and wide-column, have gained much attention in various trending (business) application domains like smart logistics, social network analysis, and medical…

Databases · Computer Science 2020-07-16 Jonas Dann , Daniel Ritter , Holger Fröning

To maximize the performance of concurrent data structures, researchers have often turned to highly complex fine-grained techniques, resulting in efficient and elegant algorithms, which can however be often difficult to understand and prove…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-12-21 Trevor Brown , William Sigouin , Dan Alistarh

The implementation of Hyperdimensional Computing (HDC) on In-Memory Computing (IMC) architectures faces significant challenges due to the mismatch between highdimensional vectors and IMC array sizes, leading to inefficient memory…

Hardware Architecture · Computer Science 2025-02-13 Do Yeong Kang , Yeong Hwan Oh , Chanwook Hwang , Jinhee Kim , Kang Eun Jeon , Jong Hwan Ko

Recently, MapReduce based spatial query systems have emerged as a cost effective and scalable solution to large scale spatial data processing and analytics. MapReduce based systems achieve massive scalability by partitioning the data and…

Databases · Computer Science 2015-09-04 Ablimit Aji , Vo Hoang , Fusheng Wang

In order to scale economically, data centers are increasingly evolving their data storage methods from the use of simple data replication to the use of more powerful erasure codes, which provide the same level of reliability as replication…

Information Theory · Computer Science 2013-11-12 Nihar B. Shah , Kangwook Lee , Kannan Ramchandran

Similarity search, the task of identifying objects most similar to a given query object under a specific metric, has gathered significant attention due to its practical applications. However, the absence of coordinate information to…

Databases · Computer Science 2024-05-14 Yifan Zhu , Ruiyao Ma , Baihua Zheng , Xiangyu Ke , Lu Chen , Yunjun Gao

Matrix multiplication is a foundational operation in scientific computing and machine learning, yet its computational complexity makes it a significant bottleneck for large-scale applications. The shift to parallel architectures, primarily…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-30 Mufakir Qamar Ansari , Mudabir Qamar Ansari

We study a set of linear transformations on the Fourier series representation of a sequence that can be used as the basis for similarity queries on time-series data. We show that our set of transformations is rich enough to formulate…

Databases · Computer Science 2007-05-23 Davood Rafiei , Alberto Mendelzon

In multi-core systems, various factors like inter-process communication, dependency, resource sharing and scheduling, level of parallelism, synchronization, number of available cores etc. influence the extent of possible High Performance…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-02-15 Urmila Shrawankar , Mayuri Joshi

The Web of Data has been gaining momentum and this leads to increasingly publish more semi-structured datasets following the RDF model, based on atomic triple units of subject, predicate, and object. Although it is a simple model,…

Servers produced by mainstream vendors are inefficient in processing Big Data queries due to bottlenecks inherent in the fundamental architecture of these systems. Current server blades contain multicore processors connected to DRAM memory…

Databases · Computer Science 2020-03-23 Ed T. Upchurch

We propose BS-tree, an in-memory implementation of the B+-tree that adopts the structure of the disk-based index (i.e., a balanced, multiway tree), setting the node size to a memory block that can be processed fast and in parallel using…

Databases · Computer Science 2025-11-14 Dimitrios Tsitsigkos , Achilleas Michalopoulos , Nikos Mamoulis , Manolis Terrovitis

Dynamic neural networks (DyNNs) have become viable techniques to enable intelligence on resource-constrained edge devices while maintaining computational efficiency. In many cases, the implementation of DyNNs can be sub-optimal due to its…

Machine Learning · Computer Science 2022-12-08 Halima Bouzidi , Mohanad Odema , Hamza Ouarnoughi , Mohammad Abdullah Al Faruque , Smail Niar

Modern computer systems are characterized by deep memory hierarchies, composed of main memory, multiple layers of cache, and other specialized types of memory. In parallel and distributed systems, additional memory layers are added to this…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-07-18 David Walker , Anthony Skjellum
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