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The primary goal in cluster analysis is to discover natural groupings of objects. The field of cluster analysis is crowded with diverse methods that make special assumptions about data and address different scientific aims. Despite its…

Genomics · Quantitative Biology 2018-06-07 Gary K. Chen , Eric Chi , John Ranola , Kenneth Lange

Artificial bee colony (ABC) algorithm has proved its importance in solving a number of problems including engineering optimization problems. ABC algorithm is one of the most popular and youngest member of the family of population based…

Artificial Intelligence · Computer Science 2014-07-23 Sandeep Kumar , Vivek Kumar Sharma , Rajani Kumari

Complete enumeration of finite models of first-order logic (FOL) formulas is pivotal to universal algebra, which studies and catalogs algebraic structures. Efficient finite model enumeration is highly challenging because the number of…

Logic in Computer Science · Computer Science 2025-01-15 Choiwah Chow , Mikoláš Janota , João Araújo

Graph clustering involves the task of dividing nodes into clusters, so that the edge density is higher within clusters as opposed to across clusters. A natural, classic and popular statistical setting for evaluating solutions to this…

Machine Learning · Statistics 2016-11-17 Yudong Chen , Sujay Sanghavi , Huan Xu

AI-enabled precision medicine promises a transformational improvement in healthcare outcomes by enabling data-driven personalized diagnosis, prognosis, and treatment. However, the well-known "curse of dimensionality" and the clustered…

Machine Learning · Computer Science 2023-05-19 Amanda M. Buch , Conor Liston , Logan Grosenick

Existing clustering methods are based on a single granularity of information, such as the distance and density of each data. This most fine-grained based approach is usually inefficient and susceptible to noise. Inspired by adaptive process…

Machine Learning · Computer Science 2023-03-03 Shuyin Xia , Jiang Xie , Guoyin Wang

Monitoring electrocardiogram signals is of great significance for the diagnosis of arrhythmias. In recent years, deep learning and convolutional neural networks have been widely used in the classification of cardiac arrhythmias. However,…

Computer Vision and Pattern Recognition · Computer Science 2022-05-16 Ao Wang , Wenxing Xu , Hanshi Sun , Ninghao Pu , Zijin Liu , Hao Liu

In this paper we propose a Deep Autoencoder MIxture Clustering (DAMIC) algorithm based on a mixture of deep autoencoders where each cluster is represented by an autoencoder. A clustering network transforms the data into another space and…

Machine Learning · Computer Science 2019-03-28 Shlomo E. Chazan , Sharon Gannot , Jacob Goldberger

Urban structure detection is a basic task in urban geography. Clustering is a core technology to detect the patterns of urban spatial structure, urban functional region, and so on. In big data era, diverse urban sensing datasets recording…

Social and Information Networks · Computer Science 2017-07-13 Xin Lin , Haifeng Li , Yan Zhang , Lei Gao , Ling Zhao , Min Deng

The classical method of determining the atomic structure of complex molecules by analyzing diffraction patterns is currently undergoing drastic developments. Modern techniques for producing extremely bright and coherent X-ray lasers allow a…

Biomolecules · Quantitative Biology 2015-10-12 Tomas Ekeberg , Stefan Engblom , Jing Liu

The Aho-Corasick algorithm is multiple patterns searching algorithm running sequentially in various applications like network intrusion detection and bioinformatics for finding several input strings within a given large input string. The…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-11-27 Vajira Thambawita , Roshan G. Ragel , Dhammike Elkaduwe

Time series classification is an important analytical task across diverse domains. However, its practical application is often hindered by the scarcity of labeled data and the requirement for substantial computational resources. To address…

Machine Learning · Computer Science 2026-04-29 Xuanhao Yang , Bing Xue , Mengjie Zhang

Current computational methods for exon-intron structure prediction from a cluster of transcript (EST, mRNA) data do not exhibit the time and space efficiency necessary to process large clusters of over than 20,000 ESTs and genes longer than…

Genomics · Quantitative Biology 2010-05-11 Paola Bonizzoni , Gianluca Della Vedova , Yuri Pirola , Raffaella Rizzi

Exact Bayesian structure discovery in Bayesian networks requires exponential time and space. Using dynamic programming (DP), the fastest known sequential algorithm computes the exact posterior probabilities of structural features in…

Artificial Intelligence · Computer Science 2016-08-16 Yetian Chen , Jin Tian , Olga Nikolova , Srinivas Aluru

We propose a novel approach to image classification inspired by complex nonlinear biological visual processing, whereby classical convolutional neural networks (CNNs) are equipped with learnable higher-order convolutions. Our model…

Computer Vision and Pattern Recognition · Computer Science 2025-12-03 Simone Azeglio , Olivier Marre , Peter Neri , Ulisse Ferrari

Model-based clustering approaches concern the paradigm of exploratory data analysis relying on the finite mixture model to automatically find a latent structure governing observed data. They are one of the most popular and successful…

Methodology · Statistics 2014-04-29 Faicel Chamroukhi

Accurate pattern center determination has long been a challenge for the electron backscatter diffraction (EBSD) community and is becoming critically accuracy-limiting for more recent advanced EBSD techniques. Here, we study the parameter…

Materials Science · Physics 2019-08-29 Edward L. Pang , Peter M. Larsen , Christopher A. Schuh

1.A goal of many research programs in biology is to extract meaningful insights from large, complex data sets. Researchers in Ecology, Evolution and Behavior (EEB) often grapple with long-term, observational data sets from which they…

Quantitative Methods · Quantitative Biology 2020-10-16 Zachary M. Laubach , Eleanor J. Murray , Kim L. Hoke , Rebecca J. Safran , Wei Perng

We propose an automated computational algorithm for simultaneous model selection and parameter identification for the hyperelastic mechanical characterization of human brain tissue. Following the motive of the recently proposed…

Quantitative Methods · Quantitative Biology 2024-04-17 Moritz Flaschel , Huitian Yu , Nina Reiter , Jan Hinrichsen , Silvia Budday , Paul Steinmann , Siddhant Kumar , Laura De Lorenzis

We present EvoSort, a general-purpose adaptive parallel parallel sorting framework accessible at the Python level. EvoSort employs a Genetic Algorithm (GA) to automatically discover and refine critical parameters, including insertion sort…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-05 Shashank Raj , Kalyanmoy Deb