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Motivated by average-case trace reconstruction and coding for portable DNA-based storage systems, we initiate the study of \emph{coded trace reconstruction}, the design and analysis of high-rate efficiently encodable codes that can be…

Information Theory · Computer Science 2019-09-11 Mahdi Cheraghchi , Ryan Gabrys , Olgica Milenkovic , João Ribeiro

Code search is vital in the maintenance and extension of software systems. Past works have used separate language models for the natural language and programming language artifacts on models with multiple encoders and different loss…

Software Engineering · Computer Science 2024-10-31 Monoshiz Mahbub Khan , Zhe Yu

We present Entropy Adaptive Decoding (EAD), a novel approach for efficient language model inference that dynamically switches between different-sized models based on prediction uncertainty. By monitoring rolling entropy in model logit…

Machine Learning · Computer Science 2025-02-12 Toby Simonds

This paper introduces a new family of reconstruction codes which is motivated by applications in DNA data storage and sequencing. In such applications, DNA strands are sequenced by reading some subset of their substrings. While previous…

Information Theory · Computer Science 2022-05-10 Yonatan Yehezkeally , Daniella Bar-Lev , Sagi Marcovich , Eitan Yaakobi

In the computational-mechanics structural analysis of one-dimensional cellular automata the following automata-theoretic analogue of the \emph{change-point problem} from time series analysis arises: \emph{Given a string $\sigma$ and a…

Computer Vision and Pattern Recognition · Computer Science 2016-08-31 Carl S. McTague , James P. Crutchfield

Large language models (LLMs) achieve remarkable generative performance, yet their output quality is dependent on the decoding strategy. While sampling-based methods (e.g., top-k, nucleus) and search-and-select based methods (e.g., beam…

Machine Learning · Computer Science 2026-05-12 Benjamin Patrick Evans , Sumitra Ganesh , Leo Ardon

In settings from fact-checking to question answering, we frequently want to know whether a collection of evidence (premises) entails a hypothesis. Existing methods primarily focus on the end-to-end discriminative version of this task, but…

Computation and Language · Computer Science 2022-10-31 Kaj Bostrom , Zayne Sprague , Swarat Chaudhuri , Greg Durrett

Recent research demonstrates the effectiveness of using pre-trained language models for legal case retrieval. Most of the existing works focus on improving the representation ability for the contextualized embedding of the [CLS] token and…

Information Retrieval · Computer Science 2024-03-28 Haitao Li , Qingyao Ai , Xinyan Han , Jia Chen , Qian Dong , Yiqun Liu , Chong Chen , Qi Tian

The general trace reconstruction problem seeks to recover an original sequence from its noisy copies independently corrupted by deletions, insertions, and substitutions. This problem arises in applications such as DNA data storage, a…

Machine Learning · Computer Science 2025-07-18 Franziska Weindel , Michael Girsch , Reinhard Heckel

DNA synthesis is considered as one of the most expensive components in current DNA storage systems. In this paper, focusing on a common synthesis machine, which generates multiple DNA strands in parallel following a fixed supersequence,we…

Information Theory · Computer Science 2025-05-13 Yajuan Liu , Tolga M. Duman

This study explores the self-synchronization problem in DNA coding, specifically addressing single-deletion errors without using delimiters between codewords. We aim to identify the beginning of each codeword without using delimiters,…

Information Theory · Computer Science 2026-03-31 Whan-Hyuk Choi

Conditional neural text generation models generate high-quality outputs, but often concentrate around a mode when what we really want is a diverse set of options. We present a search algorithm to construct lattices encoding a massive number…

Computation and Language · Computer Science 2022-05-04 Jiacheng Xu , Siddhartha Reddy Jonnalagadda , Greg Durrett

A lot of work has been done in the field of image compression via machine learning, but not much attention has been given to the compression of natural language. Compressing text into lossless representations while making features easily…

Computation and Language · Computer Science 2019-08-05 Gabriele Prato , Mathieu Duchesneau , Sarath Chandar , Alain Tapp

Decoding strategies play a central role in shaping the reasoning ability of large language models (LLMs). Traditional methods such as greedy decoding and beam search often suffer from error propagation, while sampling-based approaches…

We present a new method to detect duplicates used to merge different bibliographic record corpora with the help of lexical and social information. As we show, a trivial key is not available to delete useless documents. Merging heteregeneous…

Databases · Computer Science 2015-04-29 Nicolas Turenne

Word embeddings are a powerful approach for analyzing language and have been widely popular in numerous tasks in information retrieval and text mining. Training embeddings over huge corpora is computationally expensive because the input is…

Machine Learning · Computer Science 2018-12-11 Avishek Anand , Megha Khosla , Jaspreet Singh , Jan-Hendrik Zab , Zijian Zhang

Offline handwritten text recognition from images is an important problem for enterprises attempting to digitize large volumes of handmarked scanned documents/reports. Deep recurrent models such as Multi-dimensional LSTMs have been shown to…

Computation and Language · Computer Science 2018-07-27 Arindam Chowdhury , Lovekesh Vig

Consider a binary word being transmitted through a communication channel that introduces deletable errors where each bit of the word is either retained, flipped, erased or deleted. The simplest code for correcting \emph{all} possible…

Information Theory · Computer Science 2018-05-03 Ghurumuruhan Ganesan

This paper describes a new method of data encoding which may be used in various modern digital, computer and telecommunication systems and devices. The method permits the compression of data for storage or transmission, allowing the exact…

Information Theory · Computer Science 2012-01-27 Igor Nesiolovskiy , Artem Nesiolovskiy

Semantic sentence embedding models encode natural language sentences into vectors, such that closeness in embedding space indicates closeness in the semantics between the sentences. Bilingual data offers a useful signal for learning such…

Computation and Language · Computer Science 2020-11-20 John Wieting , Graham Neubig , Taylor Berg-Kirkpatrick