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We explore the availability and persistence of URLs cited in articles published in D-Lib Magazine. We extracted 4387 unique URLs referenced in 453 articles published from July 1995 to August 2004. The availability was checked three times a…
As computer systems become more and more complex, software and tools lag more and more behind. This is especially true for scientific software that often demands high performance, and thus needs to take advantage of parallelisms, memory…
The proliferation of open-source scientific software for science and research presents opportunities and challenges. In this paper, we introduce the SciCat dataset -- a comprehensive collection of Free-Libre Open Source Software (FLOSS)…
Various studies have attempted to assess the amount of free full text available on the web and recent work have suggested that we are close to the 50% mark for freely available articles (Archambault et al. 2013; Bjork et al. 2010; Jamali…
Code search is a core software engineering task. Effective code search tools can help developers substantially improve their software development efficiency and effectiveness. In recent years, many code search studies have leveraged…
Software is an important tool for scholarly work, but software produced for research is in many cases not easily identifiable or discoverable. A potential first step in linking research and software is software identification. In this paper…
Clone-and-own approach is a natural way of source code reuse for software developers. To assess how known bugs and security vulnerabilities of a cloned component affect an application, developers and security analysts need to identify an…
We present the Webis-STEREO-21 dataset, a massive collection of Scientific Text Reuse in Open-access publications. It contains more than 91 million cases of reused text passages found in 4.2 million unique open-access publications.…
Open-sourcing research publications is a key enabler for the reproducibility of studies and the collective scientific progress of a research community. As all fields of science develop more advanced algorithms, we become more dependent on…
We introduce a large-scale dataset of the complete texts of free/open source software (FOSS) license variants. To assemble it we have collected from the Software Heritage archive-the largest publicly available archive of FOSS source code…
The Smithsonian/NASA Astrophysics Data System (ADS) provides a search system for the astronomy and physics scholarly literature. All major and many smaller astronomy journals that were published on paper have been scanned back to volume 1…
Background/Aims: The increasing expense of the drug development process has seen interest in the use of adaptive designs (ADs) grow substantially in recent years. Accordingly, much research has been conducted to identify potential barriers…
Reproducibility is a key aspect for scientific advancement across disciplines, and reducing barriers for open science is a focus area for the theme of Interspeech 2023. Availability of source code is one of the indicators that facilitates…
We present a dataset of 408,590 astrophysics papers from arXiv (astro-ph), spanning 1992 through July 2025. Each paper has been processed through a multi-stage pipeline to produce: (1) structured summaries organized into six semantic…
In Open Source Software, the source code and any other resources available in a project can be viewed or reused by anyone subject to often permissive licensing restrictions. In contrast to some studies of dependency-based reuse supported…
The scientific enterprise depends critically on the preservation of and open access to published data. This basic tenet applies acutely to phylogenies (estimates of evolutionary relationships among species). Increasingly, phylogenies are…
Under the data-driven research paradigm, research software has come to play crucial roles in nearly every stage of scientific inquiry. Scholars are advocating for the formal citation of software in academic publications, treating it on par…
Considerable scientific work involves locating, analyzing, systematizing, and synthesizing other publications. Its results end up in a paper's "background" section or in standalone articles, which include meta-analyses and systematic…
Reproducibility should be a cornerstone of scientific research and is a growing concern among the scientific community and the public. Understanding how to design services and tools that support documentation, preservation and sharing is…
Is there a difference in citation rates between articles that were published with links to data and articles that were not? Besides being interesting from a purely academic point of view, this question is also highly relevant for the…