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This paper considers neural representation through the lens of active inference, a normative framework for understanding brain function. It delves into how living organisms employ generative models to minimize the discrepancy between…

Neurons and Cognition · Quantitative Biology 2023-10-24 Giovanni Pezzulo , Leo D'Amato , Francesco Mannella , Matteo Priorelli , Toon Van de Maele , Ivilin Peev Stoianov , Karl Friston

Most models of neurons incorporate a capacitor to account for the marked capacitive behavior exhibited by the cell membrane. However, such capacitance is widely considered constant, thereby neglecting the possible effects of time-dependent…

Neurons and Cognition · Quantitative Biology 2025-12-29 Matías Courdurier , Leonel E. Medina , Esteban Paduro

Laboratory-grown, engineered living neuronal networks in vitro have emerged in the last years as an experimental technique to understand the collective behavior of neuronal assemblies in relation to their underlying connectivity. An…

Neurons and Cognition · Quantitative Biology 2025-01-09 Akke Mats Houben , Jordi Garcia-Ojalvo , Jordi Soriano

In this paper we revisit the concept of mobility entropy. Over time, the structure of spatial interactions among urban centres tends to become more complex and evolves from centralised models to more scattered origin and destination…

Physics and Society · Physics 2021-06-30 Valentina Marin , Carlos Molinero , Elsa Arcaute

Several approaches to cognition and intelligence research rely on statistics-based models testing, namely factor analysis. In the present work we exploit the emerging dynamical systems perspective putting the focus on the role of the…

Physics and Society · Physics 2018-03-15 Gemma Rosell-Tarragó , Emanuele Cozzo , Albert Díaz-Guilera

Novel experimental techniques reveal the simultaneous activity of larger and larger numbers of neurons. As a result there is increasing interest in the structure of cooperative -- or correlated -- activity in neural populations, and in the…

Neurons and Cognition · Quantitative Biology 2015-05-30 James Trousdale , Yu Hu , Eric Shea-Brown , Krešimir Josić

A major goal in neuroscience is to understand how populations of neurons code for stimuli or actions. While the number of neurons that can be recorded simultaneously is increasing at a fast pace, in most cases these recordings cannot access…

Neurons and Cognition · Quantitative Biology 2019-04-10 Oleksandr Sorochynskyi , Stéphane Deny , Olivier Marre , Ulisse Ferrari

Many recent efforts in computational modeling of macro-scale brain dynamics have begun to take a data-driven approach by incorporating structural and/or functional information derived from subject data. Here, we discuss recent work using…

Neurons and Cognition · Quantitative Biology 2018-11-15 Kanika Bansal , Johan Nakuci , Sarah Feldt Muldoon

Collective oscillations and their suppression by external stimulation are analyzed in a large-scale neural network consisting of two interacting populations of excitatory and inhibitory quadratic integrate-and-fire neurons. In the limit of…

Neurons and Cognition · Quantitative Biology 2021-07-14 Kestutis Pyragas , Augustinas P. Fedaravičius , Tatjana Pyragienė

Inspired by the importance of inhibitory and excitatory couplings in the brain, we analyze the largest eigenvalue statistics of random networks incorporating such features. We find that the largest real part of eigenvalues of a network,…

Disordered Systems and Neural Networks · Physics 2013-04-30 Sanjiv Kumar Dwivedi , Sarika Jalan

Correlations in spike-train ensembles can seriously impair the encoding of information by their spatio-temporal structure. An inevitable source of correlation in finite neural networks is common presynaptic input to pairs of neurons. Recent…

Neurons and Cognition · Quantitative Biology 2015-06-04 Tom Tetzlaff , Moritz Helias , Gaute T. Einevoll , Markus Diesmann

The relationship between complex, brain oscillations and the dynamics of individual neurons is poorly understood. Here we utilize Maximum Caliber, a dynamical inference principle, to build a minimal, yet general model of the collective…

Neurons and Cognition · Quantitative Biology 2020-09-04 Corey Weistuch , Lilianne R. Mujica-Parodi , Ken Dill

This paper proposes to study neural networks through neuronal correlation, a statistical measure of correlated neuronal activity on the penultimate layer. We show that neuronal correlation can be efficiently estimated via weight matrix, can…

Machine Learning · Computer Science 2022-01-25 Gaojie Jin , Xinping Yi , Xiaowei Huang

In this correspondence information theoretical tools are used to investigate the statistical properties of modeled cochlear nucleus globular bushy cell spike trains. The firing patterns are obtained from a simulation software that generates…

Neurons and Cognition · Quantitative Biology 2012-04-25 Andrea Grigorescu , Marek Rudnicki , Michael Isik , Werner Hemmert , Stefano Rini

The mammalian brain is a metabolically expensive device, and evolutionary pressures have presumably driven it to make productive use of its resources. For sensory areas, this concept has been expressed more formally as an optimality…

Neurons and Cognition · Quantitative Biology 2016-03-02 Deep Ganguli , Eero P. Simoncelli

In this paper we address the question of statistical model selection for a class of stochastic models of biological neural nets. Models in this class are systems of interacting chains with memory of variable length. Each chain describes the…

Statistics Theory · Mathematics 2018-12-19 A. Duarte , A. Galves , E. Löcherbach , G. Ost

In this paper, we introduce matrix entropy as an analytical tool for studying supervised learning, investigating the information content of data representations and classification head vectors, as well as the dynamic interactions between…

Machine Learning · Computer Science 2025-03-03 Kun Song , Zhiquan Tan , Bochao Zou , Jiansheng Chen , Huimin Ma , Weiran Huang

The pervasive presence spatial and size structure in biological populations challenges fundamental assumptions at the heart of continuum models of population dynamics based on mean densities (local or global) only. Individual-based models…

Populations and Evolution · Quantitative Biology 2012-02-29 Michael Raghib , Nicholas A. Hill , Ulf Dieckmann

A central challenge in the computational modeling of neural dynamics is the trade-off between accuracy and simplicity. At the level of individual neurons, nonlinear dynamics are both experimentally established and essential for neuronal…

We use statistical estimates of the entropy rate of spike train data in order to make inferences about the underlying structure of the spike train itself. We first examine a number of different parametric and nonparametric estimators (some…

Neurons and Cognition · Quantitative Biology 2008-03-27 Yun Gao , Ioannis Kontoyiannis , Elie Bienenstock