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Cross-linked actomyosin bundles retract when severed in vivo by laser ablation, or when isolated from the cell and micromanipulated in vitro in the presence of ATP. We identify the time scale for contraction as a viscoelastic time tau,…

Quantitative Methods · Quantitative Biology 2015-06-05 Natsuhiko Yoshinaga , Philippe Marcq

The process of crumpling a sheet and compacting it into a ball is dependent on many parameters that are difficult to disentangle. We study the effect of plasticity on the crumpling process, and disentangle the effects of plasticity and…

Soft Condensed Matter · Physics 2016-02-02 Mehdi Habibi , Mokhtar Adda-Bedia , Daniel Bonn

We study the dynamic coarsening of wrinkles in an elastic sheet that is compressed while lying on a thin layer of viscous liquid. When the ends of the sheet are instantaneously brought together by a small distance, viscous resistance…

Fluid Dynamics · Physics 2017-03-24 Ousmane Kodio , Ian M. Griffiths , Dominic Vella

A description of phase separation kinetics for solid binary (A,B) mixtures in thin film geometry based on the Kawasaki spin-exchange kinetic Ising model is presented in a discrete lattice molecular field formulation. It is shown that the…

Statistical Mechanics · Physics 2009-11-13 Subir K. Das , Jürgen Horbach , Kurt Binder

Lattice structures have been widely used in various applications of additive manufacturing due to its superior physical properties. If modeled by triangular meshes, a lattice structure with huge number of struts would consume massive…

Computational Geometry · Computer Science 2021-02-02 Shengjun Liu , Tao Liu , Qiang Zou , Weiming Wang , Eugeni L. Doubrovski , Charlie C. L. Wang

A discrete model for the sintering of polydisperse, inhomogeneous arrays of cylinders is presented with empirical contact force-laws, taking into account plastic deformations, cohesion, temperature dependence (melting), and long-time…

Statistical Mechanics · Physics 2007-05-23 Stefan Luding , Karsten Manetsberger , Johannes Müllers

The study of the interactions of living adherent cells with mechanically stable (visco)elastic materials enables understanding and exploiting physiological phenomena mediated by cell-extracellular communication. However, insight on the…

A non-perturbative algebraic theory of lattice Boltzmann method is developed based on a symmetry of a product. It involves three steps: (i) Derivation of admissible lattices in one spatial dimension through a matching condition which…

Statistical Mechanics · Physics 2015-05-14 Ilya Karlin , Shyam Chikatamarla , Pietro Asinari

The steady-state of a generalized coagulation-decoagulation model on a one-dimensional lattice with reflecting boundaries is studied using a matrix-product approach. It is shown that the quadratic algebra of the model has a four-dimensional…

Statistical Mechanics · Physics 2009-11-13 Farhad H. Jafarpour , Ali Aghamohammadi

We describe a percolation-type approach to modeling of the processes of aging and certain other properties of tissues analyzed as systems consisting of interacting cells. Tissues are considered as structures made of regular healthy,…

Statistical Mechanics · Physics 2016-01-28 Vladimir Privman , Vyacheslav Gorshkov , Sergiy Libert

The complexity and heterogeneity of bone tissue require a multiscale modelling to understand its mechanical behaviour and its remodelling mechanisms. In this paper, a novel multiscale hierarchical approach including microfibril scale based…

Medical Physics · Physics 2014-03-13 Abdelwahed Barkaoui , Abdessalem Chamekh , Merzouki Tarek , Ridha Hambli , Mkaddem Ali

Cells exhibit qualitatively different behaviors on substrates with different rigidities. The fact that cells are more polarized on the stiffer substrate motivates us to construct a two-dimensional cell with the distribution of focal…

Biological Physics · Physics 2017-07-26 Guangyuan Yu , Jingchen Feng , Haoran Man , Herbert Levine

Columnar buckling is a ubiquitous phenomenon that occurs in both living things and man-made objects, regardless of the length scale ranging from macroscopic to nanometric structures. In general, analyzing the post-buckling behavior of a…

Materials Science · Physics 2020-10-13 Hiroyuki Shima

Given the importance of dynamic contact angle, its numerous applications and the complexity and difficulty of use of available approaches, here we present a new simple semi-empirical models for estimation of dynamic contact angle's…

Fluid Dynamics · Physics 2019-09-18 Pooyan Heravi , Zung-Hang Wei , Farschad Torabi

Many essential cellular processes, including cell division and the establishment of cell polarity during embryogenesis, are regulated by pattern-forming proteins. These proteins often need to bind to a substrate, such as the cell membrane,…

Soft Condensed Matter · Physics 2025-10-08 Amélie Chardac , Michael M. Norton , Jonathan Touboul , Guillaume Duclos

The interplay of membrane proteins is vital for many biological processes, such as cellular transport, cell division, and signal transduction between nerve cells. Theoretical considerations have led to the idea that the membrane itself…

Soft Condensed Matter · Physics 2016-11-28 Casper van der Wel , Afshin Vahid , Anđela Šarić , Timon Idema , Doris Heinrich , Daniela J. Kraft

We propose a discrete lattice model of the energy of dislocations in three-dimensional crystals which properly accounts for lattice symmetry and geometry, arbitrary harmonic interatomic interactions, elastic deformations and discrete…

Analysis of PDEs · Mathematics 2024-07-23 Sergio Conti , Adriana Garroni , Michael Ortiz

The reaction-diffusion models have been extensively applied to explain the mechanism of pattern formations in early embryogenesis based on geometrically confined microtissues consisting of human pluripotent stem cells. Recently, mechanical…

Biological Physics · Physics 2022-11-22 Tiankai Zhao , Hongyan Yuan

We establish links between three different models for multifragmentation: the percolation model, the lattice gas model and the statistical multifragmentation model. There are remarkable similarities between the lattice gas model and the…

Nuclear Theory · Physics 2007-05-23 S. Das Gupta , J. Pan , I. Kvasnikova , C. Gale

The model analyzes the muscle fiber as a deformable system for which experimental data are determinated with the help of the laws of Newtonian mechanic. The model predicts the four transient phases for the shortening of a muscle fiber…

Tissues and Organs · Quantitative Biology 2013-11-19 Sylvain Louvet