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Representation learning and \emph{de novo} generation of proteins are pivotal computational biology tasks. Whilst natural language processing (NLP) techniques have proven highly effective for protein sequence modelling, structure modelling…

Quantitative Methods · Quantitative Biology 2025-01-08 Benoit Gaujac , Jérémie Donà , Liviu Copoiu , Timothy Atkinson , Thomas Pierrot , Thomas D. Barrett

The Efficient Adaptive Transformer (EAT) framework unifies three adaptive efficiency techniques - progressive token pruning, sparse attention, and dynamic early exiting - into a single, reproducible architecture for input-adaptive…

Computation and Language · Computer Science 2025-10-16 Jan Miller

We propose a method for learning dynamical systems from high-dimensional empirical data that combines variational autoencoders and (spatio-)temporal attention within a framework designed to enforce certain scientifically-motivated…

Machine Learning · Computer Science 2023-06-22 Kai Lagemann , Christian Lagemann , Sach Mukherjee

Deep learning-based lossless compression methods offer substantial advantages in compressing medical volumetric images. Nevertheless, many learning-based algorithms encounter a trade-off between practicality and compression performance.…

Image and Video Processing · Electrical Eng. & Systems 2023-11-29 Qianhao Chen , Jietao Chen

Most learning-based image compression methods lack efficiency for high image quality due to their non-invertible design. The decoding function of the frequently applied compressive autoencoder architecture is only an approximated inverse of…

Image and Video Processing · Electrical Eng. & Systems 2024-05-24 Marc Windsheimer , Fabian Brand , André Kaup

For effective human-robot teaming, it is important for the robots to be able to share their visual perception with the human operators. In a harsh remote collaboration setting, data compression techniques such as autoencoder can be utilized…

Computer Vision and Pattern Recognition · Computer Science 2021-12-28 Hyeonwoo Yu , Jean Oh

The prediction of periodical time-series remains challenging due to various types of data distortions and misalignments. Here, we propose a novel model called Temporal embedding-enhanced convolutional neural Network (TeNet) to learn…

Machine Learning · Computer Science 2022-02-09 Jiajun Liu , Kun Zhao , Brano Kusy , Ji-rong Wen , Raja Jurdak

Graph Neural Networks (GNNs) offer a compact and computationally efficient way to learn embeddings and classifications on graph data. GNN models are frequently large, making distributed minibatch training necessary. The primary contribution…

Machine Learning · Computer Science 2024-04-22 Alok Tripathy , Katherine Yelick , Aydin Buluc

Deep learning models tend to underperform in the presence of domain shifts. Domain transfer has recently emerged as a promising approach wherein images exhibiting a domain shift are transformed into other domains for augmentation or…

Image and Video Processing · Electrical Eng. & Systems 2022-10-27 Weinan Song , Gaurav Fotedar , Nima Tajbakhsh , Ziheng Zhou , Lei He , Xiaowei Ding

Existing subset selection methods for efficient learning predominantly employ discrete combinatorial and model-specific approaches which lack generalizability. For an unseen architecture, one cannot use the subset chosen for a different…

Machine Learning · Computer Science 2024-09-20 Eeshaan Jain , Tushar Nandy , Gaurav Aggarwal , Ashish Tendulkar , Rishabh Iyer , Abir De

Fine-tuning is widely applied in image classification tasks as a transfer learning approach. It re-uses the knowledge from a source task to learn and obtain a high performance in target tasks. Fine-tuning is able to alleviate the challenge…

Computer Vision and Pattern Recognition · Computer Science 2022-07-27 Xuyang Shen , Jo Plested , Sabrina Caldwell , Yiran Zhong , Tom Gedeon

Variational Autoencoders for multimodal data hold promise for many tasks in data analysis, such as representation learning, conditional generation, and imputation. Current architectures either share the encoder output, decoder input, or…

In this work, we propose a method for learning driver models that account for variables that cannot be observed directly. When trained on a synthetic dataset, our models are able to learn encodings for vehicle trajectories that distinguish…

Machine Learning · Computer Science 2017-04-20 Jeremy Morton , Mykel J. Kochenderfer

RNA function is intimately related to its structural dynamics. Molecular dynamics simulations are useful for exploring biomolecular flexibility but are severely limited by the accessible timescale. Enhanced sampling methods allow this…

Biomolecules · Quantitative Biology 2018-02-06 Vojtěch Mlýnský , Giovanni Bussi

Training generative models that capture rich semantics of the data and interpreting the latent representations encoded by such models are very important problems in un-/self-supervised learning. In this work, we provide a simple algorithm…

Machine Learning · Computer Science 2024-09-02 Samuel C. Hoffman , Payel Das , Karthikeyan Shanmugam , Kahini Wadhawan , Prasanna Sattigeri

This work presents a novel means for understanding learning dynamics and scaling relations in neural networks. We show that certain measures on the spectrum of the empirical neural tangent kernel, specifically entropy and trace, yield…

Machine Learning · Computer Science 2024-10-11 Samuel Tovey , Sven Krippendorf , Michael Spannowsky , Konstantin Nikolaou , Christian Holm

Transferring knowledge from an image synthesis model trained on a large dataset is a promising direction for learning generative image models from various domains efficiently. While previous works have studied GAN models, we present a…

Computer Vision and Pattern Recognition · Computer Science 2022-10-04 Kihyuk Sohn , Yuan Hao , José Lezama , Luisa Polania , Huiwen Chang , Han Zhang , Irfan Essa , Lu Jiang

The recent success of neural machine translation models relies on the availability of high quality, in-domain data. Domain adaptation is required when domain-specific data is scarce or nonexistent. Previous unsupervised domain adaptation…

Computation and Language · Computer Science 2019-08-29 Zi-Yi Dou , Junjie Hu , Antonios Anastasopoulos , Graham Neubig

Generative models aim to learn the probability distributions underlying data, enabling the generation of new, realistic samples. Quantum inspired generative models, such as Born machines based on the matrix product state framework, have…

Machine Learning · Computer Science 2025-12-30 Wanda Hou , Miao Li , Yi-Zhuang You

The latent code of the recent popular model StyleGAN has learned disentangled representations thanks to the multi-layer style-based generator. Embedding a given image back to the latent space of StyleGAN enables wide interesting semantic…

Computer Vision and Pattern Recognition · Computer Science 2020-07-06 Shanyan Guan , Ying Tai , Bingbing Ni , Feida Zhu , Feiyue Huang , Xiaokang Yang