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Many biological systems are governed by difference equations and exhibit discrete-time dynamics. Examples include the size of a population when generations are non-overlapping, and the incidence of a disease when infections are recorded at…

Populations and Evolution · Quantitative Biology 2025-09-25 Shuyun Jiao , David Waxman

Understanding climate dynamics requires going beyond correlations in observational data to uncover their underlying causal process. Latent drivers, such as atmospheric processes, play a critical role in temporal dynamics, while direct…

Machine Learning · Computer Science 2025-10-10 Minghao Fu , Biwei Huang , Zijian Li , Yujia Zheng , Ignavier Ng , Guangyi Chen , Yingyao Hu , Kun Zhang

Few questions in condensed matter science have proven as difficult to unravel as the interplay between structure and dynamics in supercooled liquids and glasses. The conundrum: close to the glass transition, the dynamics slow down…

We consider discrete dynamical systems and lattice models in statistical mechanics from the point of view of their symmetry groups. We describe a C program for symmetry analysis of discrete systems. Among other features, the program…

Mathematical Physics · Physics 2007-10-08 Vladimir V. Kornyak

The structure of QCD vacuum can be studied from first principles using lattice-regularized theory. This line of research entered a qualitatively new phase recently, wherein the space-time structure (at least for some quantities) can be…

High Energy Physics - Lattice · Physics 2010-11-05 Ivan Horvath

Biological active matter is typically tightly coupled to chemical reaction networks affecting its assembly-disassembly dynamics and stress generation. We show that localized states can emerge spontaneously if assembly of active matter is…

Biological Physics · Physics 2023-12-15 Luca Barberi , Karsten Kruse

Local causal states are latent representations that capture organized pattern and structure in complex spatiotemporal systems. We expand their functionality, framing them as spacetime autoencoders. Previously, they were only considered as…

Machine Learning · Computer Science 2020-10-13 Adam Rupe , James P. Crutchfield

In this contribution we consider Collective Behaviours as coherent sequences of spatial configurations adopted by interacting agents through corresponding different structures over time. Multiple structures over time and their sequences are…

Adaptation and Self-Organizing Systems · Physics 2011-12-26 Gianfranco Minati , Ignazio Licata

Spatial systems with heterogeneities are ubiquitous in nature, from precipitation, temperature and soil gradients controlling vegetation growth to morphogen gradients controlling gene expression in embryos. Such systems, generally described…

Dynamical Systems · Mathematics 2023-05-10 Denis D. Patterson , Simon A. Levin , A. Carla Staver , Jonathan D. Touboul

This paper introduces the Theory of the Unique Latent Pattern (ULP), a formal epistemic framework that redefines the origin of apparent complexity in dynamic systems. Rather than attributing unpredictability to intrinsic randomness or…

Artificial Intelligence · Computer Science 2025-05-27 Mohamed Aly Bouke

Quantum collision models normally consist of a system interacting with a set of ancillary units representing the environment. While these ancillary systems are usually assumed to be either two level systems (TLS) or harmonic oscillators, in…

Quantum Physics · Physics 2024-05-31 Stefano Cusumano , Gabriele De Chiara

Cellular automata (CA) are discrete-time dynamical systems with local update rules on a lattice. Despite their elementary definition, CA support a wide spectrum of macroscopic phenomena central to statistical physics: equilibrium and…

Statistical Mechanics · Physics 2026-03-31 Mihir Metkar , Neha Sah , Yichen Zhou

Dynamical systems theory has long provided a foundation for understanding evolving phenomena across scientific domains. Yet, the application of this theory to complex real-world systems remains challenging due to issues in mathematical…

Machine Learning · Computer Science 2024-11-05 Samuel A. Moore , Brian P. Mann , Boyuan Chen

Each semigroup describing the time evolution of an open quantum system on a finite dimensional Hilbert space is related to a special structure of this space. It is shown how the space can be decomposed into subspaces: One is related to…

Mathematical Physics · Physics 2015-05-27 Bernhard Baumgartner , Heide Narnhofer

Various natural and engineered systems, from urban traffic flow to the human brain, can be described by large-scale networked dynamical systems. These systems are similar in being comprised of a large number of microscopic subsystems, each…

Dynamical Systems · Mathematics 2026-01-06 Sabbir Ahmed , Hafiz Fareed Ahmed , Erfan Nozari

The consistent histories formalism can be used to describe histories comprised of events across many systems, times, and places, plausibly rich enough to describe our experiences of the classical world; however, many consistent history sets…

Quantum Physics · Physics 2026-05-11 Nick Ormrod , Tein van der Lugt , Yìlè Yīng , Jarosław K. Korbicz

Small particles transported by a fluid medium do not necessarily have to follow the flow. We show that for a wide class of time-periodic incompressible flows inertial particles have a tendency to spontaneously align in one-dimensional…

Fluid Dynamics · Physics 2015-05-28 Dmitri Pushkin , Denis Melnikov , Valentina Shevtsova

Complexity science offers a wide range of measures for quantifying unpredictability, structure, and information. Yet, a systematic conceptual organization of these measures is still missing. We present a unified framework that locates…

Machine Learning · Computer Science 2025-05-13 Nima Dehghani

We demonstrate that chimera behavior can be observed in nonlocally coupled networks of excitable systems in the presence of noise. This phenomenon is distinct from classical chimeras, which occur in deterministic oscillatory systems, and it…

Adaptation and Self-Organizing Systems · Physics 2016-07-06 Nadezhda Semenova , Anna Zakharova , Vadim Anishchenko , Eckehard Schöll

We report a novel mechanism for the formation of chimera states, a peculiar spatiotemporal pattern with coexisting synchronized and incoherent domains found in ensembles of identical oscillators. Considering Stuart-Landau oscillators we…

Chaotic Dynamics · Physics 2015-06-18 Lennart Schmidt , Konrad Schönleber , Katharina Krischer , Vladimir García-Morales