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Research publications are the primary vehicle for sharing scientific progress in the form of new discoveries, methods, techniques, and insights. Unfortunately, the lack of a large-scale, comprehensive, and easy-to-use resource capturing the…

Artificial Intelligence · Computer Science 2023-05-22 Kian Ahrabian , Xinwei Du , Richard Delwin Myloth , Arun Baalaaji Sankar Ananthan , Jay Pujara

With advanced imaging, sequencing, and profiling technologies, multiple omics data become increasingly available and hold promises for many healthcare applications such as cancer diagnosis and treatment. Multimodal learning for integrative…

Genomics · Quantitative Biology 2022-12-20 Sina Tabakhi , Mohammod Naimul Islam Suvon , Pegah Ahadian , Haiping Lu

Data makes science possible. Sharing data improves visibility, and makes the research process transparent. This increases trust in the work, and allows for independent reproduction of results. However, a large proportion of data from…

Digital Libraries · Computer Science 2020-02-27 Nicholas J Tierney , Karthik Ram

Each day billions of photographs are uploaded to photo-sharing services and social media platforms. These images are packed with information about how people live around the world. In this paper we exploit this rich trove of data to…

Computer Vision and Pattern Recognition · Computer Science 2017-06-07 Kevin Matzen , Kavita Bala , Noah Snavely

The proliferation of open-source scientific software for science and research presents opportunities and challenges. In this paper, we introduce the SciCat dataset -- a comprehensive collection of Free-Libre Open Source Software (FLOSS)…

Software Engineering · Computer Science 2023-12-12 Addi Malviya-Thakur , Reed Milewicz , Lavinia Paganini , Ahmed Samir Imam Mahmoud , Audris Mockus

Novel technologies in genomics allow creating data in exascale dimension with relatively minor effort of human and laboratory and thus monetary resources compared to capabilities only a decade ago. While the availability of this data…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-11-10 Sandra Gesing , Thomas Richard Connor , Ian Taylor

Research papers in the biomedical field come with large and complex data sets that are shared with the scientific community as unstructured data files via public data repositories. Examples are sequencing, microarray, and mass spectroscopy…

Quantitative Methods · Quantitative Biology 2020-05-28 Michael Huttner , Claudio Lottaz , Christian Kohler , Rainer Spang

Many cultural institutions have made large digitized visual collections available online, often under permissible re-use licences. Creating interfaces for exploring and searching these collections is difficult, particularly in the absence…

Computer Vision and Pattern Recognition · Computer Science 2024-11-08 Taylor Arnold , Lauren Tilton

Scientific figure interpretation is a crucial capability for AI-driven scientific assistants built on advanced Large Vision Language Models. However, current datasets and benchmarks primarily focus on simple charts or other relatively…

As scientific discovery becomes increasingly data-driven, software platforms are needed to efficiently organize and disseminate data from disparate sources. This is certainly the case in the field of materials science. For example,…

Software Engineering · Computer Science 2015-11-04 Patrick Huck , Anubhav Jain , Dan Gunter , Donald Winston , Kristin Persson

Foundation models have demonstrated remarkable success across diverse domains and tasks, primarily due to the thrive of large-scale, diverse, and high-quality datasets. However, in the field of medical imaging, the curation and assembling…

Computer Vision and Pattern Recognition · Computer Science 2026-03-31 Zhongying Deng , Cheng Tang , Ziyan Huang , Jiashi Lin , Ying Chen , Junzhi Ning , Chenglong Ma , Jiyao Liu , Wei Li , Yinghao Zhu , Shujian Gao , Yanyan Huang , Sibo Ju , Yanzhou Su , Pengcheng Chen , Wenhao Tang , Tianbin Li , Haoyu Wang , Yuanfeng Ji , Hui Sun , Shaobo Min , Liang Peng , Feilong Tang , Haochen Xue , Rulin Zhou , Chaoyang Zhang , Wenjie Li , Shaohao Rui , Weijie Ma , Xingyue Zhao , Yibin Wang , Kun Yuan , Zhaohui Lu , Shujun Wang , Jinjie Wei , Lihao Liu , Dingkang Yang , Lin Wang , Yulong Li , Haolin Yang , Yiqing Shen , Lequan Yu , Xiaowei Hu , Yun Gu , Yicheng Wu , Benyou Wang , Minghui Zhang , Angelica I. Aviles-Rivero , Qi Gao , Hongming Shan , Xiaoyu Ren , Fang Yan , Hongyu Zhou , Haodong Duan , Maosong Cao , Shanshan Wang , Bin Fu , Xiaomeng Li , Zhi Hou , Chunfeng Song , Lei Bai , Yuan Cheng , Yuandong Pu , Xiang Li , Wenhai Wang , Hao Chen , Jiaxin Zhuang , Songyang Zhang , Huiguang He , Mengzhang Li , Bohan Zhuang , Zhian Bai , Rongshan Yu , Liansheng Wang , Yukun Zhou , Xiaosong Wang , Xin Guo , Guanbin Li , Xiangru Lin , Dakai Jin , Mianxin Liu , Wenlong Zhang , Qi Qin , Conghui He , Yuqiang Li , Ye Luo , Nanqing Dong , Jie Xu , Wenqi Shao , Bo Zhang , Qiujuan Yan , Yihao Liu , Jun Ma , Zhi Lu , Yuewen Cao , Zongwei Zhou , Jianming Liang , Shixiang Tang , Qi Duan , Dongzhan Zhou , Chen Jiang , Yuyin Zhou , Yanwu Xu , Jiancheng Yang , Shaoting Zhang , Xiaohong Liu , Siqi Luo , Yi Xin , Chaoyu Liu , Haochen Wen , Xin Chen , Alejandro Lozano , Min Woo Sun , Yuhui Zhang , Yue Yao , Xiaoxiao Sun , Serena Yeung-Levy , Xia Li , Jing Ke , Chunhui Zhang , Zongyuan Ge , Ming Hu , Jin Ye , Zhifeng Li , Yirong Chen , Yu Qiao , Junjun He

The importance of big data is a contested topic among social scientists. Proponents claim it will fuel a research revolution, but skeptics challenge it as unreliably measured and decontextualized, with limited utility for accurately…

Computers and Society · Computer Science 2020-06-12 Nathaniel D. Porter , Ashton M. Verdery , S. Michael Gaddis

Large-scale image retrieval benchmarks invariably consist of images from the Web. Many of these benchmarks are derived from online photo sharing networks, like Flickr, which in addition to hosting images also provide a highly interactive…

Computer Vision and Pattern Recognition · Computer Science 2012-07-18 Julian McAuley , Jure Leskovec

Detecting quality in large unstructured datasets requires capacities far beyond the limits of human perception and communicability and, as a result, there is an emerging trend towards increasingly complex analytic solutions in data science…

A publicly available dataset for federated search reflecting a real web environment has long been absent, making it difficult for researchers to test the validity of their federated search algorithms for the web setting. We present several…

Information Retrieval · Computer Science 2016-09-16 Dong Nguyen , Thomas Demeester , Dolf Trieschnigg , Djoerd Hiemstra

We present the first full description of Media Cloud, an open source platform based on crawling hyperlink structure in operation for over 10 years, that for many uses will be the best way to collect data for studying the media ecosystem on…

Big data research has attracted great attention in science, technology, industry and society. It is developing with the evolving scientific paradigm, the fourth industrial revolution, and the transformational innovation of technologies.…

Artificial Intelligence · Computer Science 2015-07-24 Hai Zhuge

Recent advances in large language models (LLMs) have led to new summarization strategies, offering an extensive toolkit for extracting important information. However, these approaches are frequently limited by their reliance on isolated…

Artificial Intelligence · Computer Science 2024-06-21 Pranav Janjani , Mayank Palan , Sarvesh Shirude , Ninad Shegokar , Sunny Kumar , Faruk Kazi

Metadata, often termed "data about data," is crucial for organizing, understanding, and managing vast omics datasets. It aids in efficient data discovery, integration, and interpretation, enabling users to access, comprehend, and utilize…

Tailoring treatment assignment to specific individuals can improve the health outcomes, but a single study may offer inadequate information for this purpose. The ability to leverage information from an auxiliary data source deemed to be…

Methodology · Statistics 2025-02-05 Ashwini Venkatasubramaniam , Julian Wolfson
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