Related papers: Duplication-Correcting Codes
In this paper we consider the problem of encoding data into \textit{repeat-free} sequences in which sequences are imposed to contain any $k$-tuple at most once (for predefined $k$). First, the capacity of the repeat-free constraint are…
If $x$ is a non-empty string then the repetition $xx$ is called a tandem repeat. Similarly, a tandem in a two dimensional array $X$ is a configuration consisting of a same primitive block $W$ that touch each other with one side or corner.…
In this paper, we investigate codes designed to correct two bursts of deletions, where each burst has a length of exactly $b$, where $b>1$. The previous best construction, achieved through the syndrome compression technique, had a…
In this paper we present several constructions to generate codes for correcting a multidimensional cluster-error. The goal is to correct a cluster-error whose shape can be a box-error, a Lee sphere error, or an error with an arbitrary…
Motivated by communication channels in which the transmitted sequences are subject to random permutations, as well as by certain DNA storage systems, we study the error control problem in settings where the information is stored/transmitted…
Constant dimension codes are used for error control in random linear network coding, so that constructions for these codes with large cardinality have achieved wide attention in the last decade. Here, we improve the so-called linkage…
Symbol-pair codes introduced by Cassuto and Blaum in 2010 are designed to protect against the pair errors in symbol-pair read channels. One of the central themes in symbol-error correction is the construction of maximal distance separable…
Nanopore sequencing, superior to other sequencing technologies for DNA storage in multiple aspects, has recently attracted considerable attention. Its high error rates, however, demand thorough research on practical and efficient coding…
Boolean cardinality constraints state that at most (at least, or exactly) $k$ out of $n$ propositional literals can be true. We propose a new class of selection networks that can be used for an efficient encoding of them. Several comparator…
We introduce the sum channel, a new channel model motivated by applications in distributed storage and DNA data storage. In the error-free case, it takes as input an $\ell$-row binary matrix and outputs an $(\ell+1)$-row matrix whose first…
Lifted Reed Solomon Codes (Guo, Kopparty, Sudan 2013) were introduced in the context of locally correctable and testable codes. They are multivariate polynomials whose restriction to any line is a codeword of a Reed-Solomon code. We…
In this paper, we propose a partitioning technique that decomposes a pair of sequences with overlapping $t$-deletion $s$-substitution balls into sub-pairs, where the $^{\leq}t$-burst-deletion balls of each sub-pair intersect. This…
This paper studies bounds and constructions of locally repairable codes (LRCs) with multiple localities so-called multiple-locality LRCs (ML-LRCs). In the simplest case of two localities some code symbols of an ML-LRC have a certain…
Identifying palindromes in sequences has been an interesting line of research in combinatorics on words and also in computational biology, after the discovery of the relation of palindromes in the DNA sequence with the HIV virus. Efficient…
A covering code is a set of codewords with the property that the union of balls, suitably defined, around these codewords covers an entire space. Generally, the goal is to find the covering code with the minimum size codebook. While most…
Distributed storage systems need to store data redundantly in order to provide some fault-tolerance and guarantee system reliability. Different coding techniques have been proposed to provide the required redundancy more efficiently than…
For binary $[n,k,d]$ linear locally repairable codes (LRCs), two new upper bounds on $k$ are derived. The first one applies to LRCs with disjoint local repair groups, for general values of $n,d$ and locality $r$, containing some previously…
Symbol-pair codes introduced by Cassuto and Blaum in 2010 are designed to protect against the pair errors in symbol-pair read channels. One of the central themes in symbol-error correction is the construction of maximal distance separable…
Motivated by polymer-based data-storage platforms that use chains of binary synthetic polymers as the recording media and read the content via tandem mass spectrometers, we propose a new family of codes that allows for both unique string…
This manuscript presents a construction method for quantum codes capable of correcting multiple deletion errors. By introducing two new alogorithms, the alternating sandwich mapping and the block error locator, the proposed method reduces…