Related papers: Duplication-Correcting Codes
Motivated by DNA storage in living organisms, and by known biological mutation processes, we study the reverse-complement string-duplication system. We fully classify the conditions under which the system has full expressiveness, for all…
This paper extends the foundational work of Dollma \emph{et al}. on codes for ordered composite DNA sequences. We consider the general setting with an alphabet of size $q$ and a resolution parameter $k$, moving beyond the binary ($q=2$)…
We consider the problem of designing low-redundancy codes in settings where one must correct deletions in conjunction with substitutions or adjacent transpositions; a combination of errors that is usually observed in DNA-based data storage.…
In this paper, we construct systematic $q$-ary two-deletion correcting codes and burst-deletion correcting codes, where $q\geq 2$ is an even integer. For two-deletion codes, our construction has redundancy $5\log n+O(\log q\log\log n)$ and…
We consider deletion correcting codes over a q-ary alphabet. It is well known that any code capable of correcting s deletions can also correct any combination of s total insertions and deletions. To obtain asymptotic upper bounds on code…
Motivated by DNA based data storage system, we investigate the errors that occur when synthesizing DNA strands in parallel, where each strand is appended one nucleotide at a time by the machine according to a template supersequence. If…
We generalize the notion of the stopping redundancy in order to study the smallest size of a trapping set in Tanner graphs of linear block codes. In this context, we introduce the notion of the trapping redundancy of a code, which…
In recent years, the emergence of DNA storage systems has led to a widespread focus on the research of codes correcting insertions, deletions, and classic substitutions. During the initial investigation, Levenshtein discovered the VT codes…
Error-correcting codes over the real field are studied which can locate outlying computational errors when performing approximate computing of real vector--matrix multiplication on resistive crossbars. Prior work has concentrated on…
In this paper, we investigate binary reconstruction codes capable of correcting one deletion and one substitution. We define the \emph{single-deletion single-substitution ball} function $ \mathcal{B} $ as a mapping from a sequence to the…
Motivated by applications in DNA-based storage and communication systems, we study deletion and insertion errors simultaneously in a burst. In particular, we study a type of error named $t$-deletion-$s$-insertion-burst ($(t,s)$-burst for…
The trapping redundancy of a linear code is the number of rows of a smallest parity-check matrix such that no submatrix forms an $(a,b)$-trapping set. This concept was first introduced in the context of low-density parity-check (LDPC) codes…
We introduce new algorithms and provide example constructions of stabilizer models for the gapped boundaries, domain walls, and $0D$ defects of Abelian composite-dimensional twisted quantum doubles. Using the physically intuitive concept of…
The problem of correcting deletions has received significant attention, partly because of the prevalence of these errors in DNA data storage. In this paper, we study the problem of correcting a consecutive burst of at most $t$ deletions in…
The concepts of pseudocodeword and pseudoweight play a fundamental role in the finite-length analysis of LDPC codes. The pseudoredundancy of a binary linear code is defined as the minimum number of rows in a parity-check matrix such that…
Ternary channels can be used to model the behavior of some memory devices, where information is stored in three different levels. In this paper, error correcting coding for a ternary channel where some of the error transitions are not…
Packet replication and elimination functions are used by time-sensitive networks (as in the context of IEEE TSN and IETF DetNet) to increase the reliability of the network. Packets are replicated onto redundant paths by a replication…
We establish a duality result between linear index coding and Locally Repairable Codes (LRCs). Specifically, we show that a natural extension of LRCs we call Generalized Locally Repairable Codes (GLCRs) are exactly dual to linear index…
We study error-correcting codes in the space $\mathcal{S}_{n,q}$ of length-$n$ multisets over a $q$-ary alphabet, motivated by permutation channels in which ordering is completely lost and errors act solely by deletions of symbols, i.e., by…
To increase the information capacity of DNA storage, composite DNA letters were introduced. We propose a novel channel model for composite DNA in which composite sequences are decomposed into ordered standard non-composite sequences. The…