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The statistical mechanical approach to complex networks is the dominant paradigm in describing natural and societal complex systems. The study of network properties, and their implications on dynamical processes, mostly focus on locally…

Statistical Mechanics · Physics 2013-06-27 Giovanni Petri , Martina Scolamiero , Irene Donato , Francesco Vaccarino

Graph Neural Networks leverage the connectivity structure of graphs as an inductive bias. Latent graph inference focuses on learning an adequate graph structure to diffuse information on and improve the downstream performance of the model.…

Machine Learning · Computer Science 2023-04-13 Haitz Sáez de Ocáriz Borde , Álvaro Arroyo , Ingmar Posner

Random graphs with latent geometric structure are popular models of social and biological networks, with applications ranging from network user profiling to circuit design. These graphs are also of purely theoretical interest within…

Probability · Mathematics 2020-08-04 Matthew Brennan , Guy Bresler , Dheeraj Nagaraj

Link prediction is a paradigmatic problem in network science with a variety of applications. In latent space network models this problem boils down to ranking pairs of nodes in the order of increasing latent distances between them. The…

Physics and Society · Physics 2020-11-03 Maksim Kitsak , Ivan Voitalov , Dmitri Krioukov

Latent space models (LSM) for network data were introduced by Hoff et al. (2002) under the basic assumption that each node of the network has an unknown position in a D-dimensional Euclidean latent space: generally the smaller the distance…

Methodology · Statistics 2014-09-26 Isabella Gollini , Thomas Brendan Murphy

We study the effects of spatial constraints on the structural properties of networks embedded in one or two dimensional space. When nodes are embedded in space, they have a well defined Euclidean distance $r$ between any pair. We assume…

Physics and Society · Physics 2009-11-13 Kosmas Kosmidis , Shlomo Havlin , Armin Bunde

Networks describe the, often complex, relationships between individual actors. In this work, we address the question of how to determine whether a parametric model, such as a stochastic block model or latent space model, fits a dataset well…

Methodology · Statistics 2025-09-10 Shane Lubold , Bolun Liu , Tyler H. McCormick

Network geometry, characterized by nodes with associated latent variables, is a fundamental feature of real-world networks. Still, when only the network edges are given, it may be difficult to assess whether the network contains an…

Physics and Society · Physics 2025-02-13 R. Michielan , C. Stegehuis

Statistical network models are useful for understanding the underlying formation mechanism and characteristics of complex networks. However, statistical models for \textit{signed networks} have been largely unexplored. In signed networks,…

Methodology · Statistics 2023-09-04 Weijing Tang , Ji Zhu

Network theory and inverse modeling are two standard tools of applied physics, whose combination is needed when studying the dynamical organization of spatially distributed systems from indirect measurements. However, the associated…

Data Analysis, Statistics and Probability · Physics 2015-01-30 Vincent Wens

Network datasets typically exhibit certain types of statistical dependencies, such as within-dyad correlation, row and column heterogeneity, and third-order dependence patterns such as transitivity and clustering. The first two of these can…

Methodology · Statistics 2018-07-24 Peter D. Hoff

State-space models effectively model multivariate time series by updating over time a representation of the system state from which predictions are made. The state representation is usually a vector without any explicit structure.…

Machine Learning · Computer Science 2026-04-07 Daniele Zambon , Andrea Cini , Cesare Alippi

Molecular graphs generally contain subgraphs (known as groups) that are identifiable and significant in composition, functionality, geometry, etc. Flat latent representations (node embeddings or graph embeddings) fail to represent, and…

Machine Learning · Computer Science 2019-04-05 Daniel T. Chang

Deep Learning (DL) has attracted a lot of attention for its ability to reach state-of-the-art performance in many machine learning tasks. The core principle of DL methods consists in training composite architectures in an end-to-end…

Machine Learning · Computer Science 2020-11-17 Carlos Lassance , Vincent Gripon , Antonio Ortega

The Manifold Hypothesis is a widely accepted tenet of Machine Learning which asserts that nominally high-dimensional data are in fact concentrated near a low-dimensional manifold, embedded in high-dimensional space. This phenomenon is…

Methodology · Statistics 2025-03-24 Nick Whiteley , Annie Gray , Patrick Rubin-Delanchy

Data describing the three-dimensional structure of physical networks is increasingly available, leading to a surge of interest in network science to explore the relationship between the shape and connectivity of physical networks. We…

Physics and Society · Physics 2024-08-20 Luka Blagojević , Márton Pósfai

Deep latent variable models learn condensed representations of data that, hopefully, reflect the inner workings of the studied phenomena. Unfortunately, these latent representations are not statistically identifiable, meaning they cannot be…

Machine Learning · Statistics 2025-06-02 Stas Syrota , Yevgen Zainchkovskyy , Johnny Xi , Benjamin Bloem-Reddy , Søren Hauberg

Real networks are finite metric spaces. Yet the geometry induced by shortest path distances in a network is definitely not its only geometry. Other forms of network geometry are the geometry of latent spaces underlying many networks, and…

Networks in nature are often formed within a spatial domain in a dynamical manner, gaining links and nodes as they develop over time. We propose a class of spatially-based growing network models and investigate the relationship between the…

Physics and Society · Physics 2013-12-30 Ari Zitin , Alex Gorowora , Shane Squires , Mark Herrera , Thomas M. Antonsen , Michelle Girvan , Edward Ott

Statistical ensembles of networks, i.e., probability spaces of all networks that are consistent with given aggregate statistics, have become instrumental in the analysis of complex networks. Their numerical and analytical study provides the…

Physics and Society · Physics 2016-08-09 Giona Casiraghi , Vahan Nanumyan , Ingo Scholtes , Frank Schweitzer