Related papers: Phase transitions in single macromolecules: loop-s…
We study the nonequilibrium phase transitions from the absorbing phase to the active phase for the model of disease spreading (Susceptible-Infected-Refractory-Susceptible (SIRS)) on a regular one dimensional lattice. In this model,…
We study a two-dimensional, off-lattice particle model introduced to describe absorbing phase transitions in driven non-Brownian suspensions. We numerically explore the $(\phi,\epsilon)$ phase diagram, where $\phi$ is the packing fraction…
The process of adsorption on a planar repulsive, "marginal" and attractive wall of long-flexible polymer chains with excluded volume interactions is investigated. The performed scaling analysis is based on formal analogy between the polymer…
Single-particle tracking allows to infer the motion of single molecules in living cells. When we observe a long trajectory (more than 100 points), it is possible that the particle switches mode of motion over time. Then, fitting a single…
We present an analysis of a partially directed walk model of a polymer which at one end is tethered to a sticky surface and at the other end is subjected to a pulling force at fixed angle away from the point of tethering. Using the kernel…
Continuum models of plasticity fail to capture the richness of microstructural evolution because the continuum is a homogeneous construction. The present study shows that an alternative way is available at the mesoscale in the form of truly…
We investigate the phases and phase-transitions in one-dimensional alternating mixed-spin (1/2-1) chain in the presence of both frustration and anisotropy. Frustration is introduced via next-nearest-neighbor interactions, while single-ion…
A general system of particles (of one or several species) on a one dimensional lattice with boundaries is considered. Two general behaviors of such systems are investigated. The stationary behavior of the system, and the dominant way of the…
We study quantum phase transitions between competing orders in one-dimensional spin systems. We focus on systems that can be mapped to a dual-field double sine-Gordon model as a bosonized effective field theory. This model contains two…
The electronic origin of a large resistance change in nanoscale junctions incorporating spin crossover molecules is demonstrated theoretically by using a combination of density functional theory and the non-equilibrium Green's functions…
We analyze numerically the critical behavior of an absorbing phase transition in the conserved transfer threshold process. We determined the steady state scaling behavior of the order parameter as a function of both, the control parameter…
The rotational Brownian motion of colloidal spheres in dense suspensions reflects local hydrodynamics and friction, both key to non-linear rheological phenomena such as shear-thickening and jamming, and transport in crowded environments,…
Experiments of periodically sheared colloidal suspensions or soft amorphous solids display a transition from reversible to irreversible particle motion that, when analysed stroboscopically in time, is interpreted as an absorbing phase…
Protein folding, peptide aggregation and crystallization, as well as adsorption of molecules on soft or solid substrates have an essential feature in common: In all these processes, structure formation is guided by a collective, cooperative…
The coupling of branching-annihilating random walks to a static field with a local conservation law is shown to change the scaling properties of their phase transitions to absorbing states. In particular, we find that DP-class transitions…
We introduce a model for stochastic transport on a one-dimensional substrate with particles assuming different conformations during their stepping cycles. These conformations correspond to different footprints on the substrate: in order to…
A hybrid percolation transition (HPT) exhibits both discontinuity of the order parameter and critical behavior at the transition point. Such dynamic transitions can occur in two ways: by cluster pruning with suppression of loop formation of…
We study in further detail particle models displaying a boundary-induced absorbing state phase transition [Phys. Rev. E. {\bf 65}, 046104 (2002) and Phys. Rev. Lett. {\bf 100}, 165701 (2008)] . These are one-dimensional systems consisting…
Conformational properties of a single flexible polyelectrolyte chain in a poor solvent are studied using constant temperature molecular dynamics simulation. The effects of counterions are explicitly taken in to account. Structural…
We study numerically a lattice model of semiflexible homopolymers with nearest neighbor attraction and energetic preference for straight joints between bonded monomers. For this we use a new algorithm, the "Pruned-Enriched Rosenbluth…