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The quartet distance is a measure of similarity used to compare two unrooted phylogenetic trees on the same set of $n$ leaves, defined as the number of subsets of four leaves related by a different topology in both trees. After a series of…

Data Structures and Algorithms · Computer Science 2020-12-03 Bartłomiej Dudek , Paweł Gawrychowski

We give a priority queue that achieves the same amortized bounds as Fibonacci heaps. Namely, find-min requires O(1) worst-case time, insert, meld and decrease-key require O(1) amortized time, and delete-min requires $O(\log n)$ amortized…

Data Structures and Algorithms · Computer Science 2010-02-11 Amr Elmasry

A data structure, called a biased range tree, is presented that preprocesses a set S of n points in R^2 and a query distribution D for 2-sided orthogonal range counting queries. The expected query time for this data structure, when queries…

Computational Geometry · Computer Science 2008-06-18 Vida Dujmovic , John Howat , Pat Morin

A chief problem in phylogenetics and database theory is the computation of a maximum consistent tree from a set of rooted or unrooted trees. A standard input are triplets, rooted binary trees on three leaves, or quartets, unrooted binary…

Discrete Mathematics · Computer Science 2010-05-31 Leo van Iersel , Matthias Mnich

The Binary Search Tree (BST) is average in computer science which supports a compact data structure in memory and oneself even conducts a row of quick algorithms, by which people often apply it in dynamical circumstance. Besides these…

Data Structures and Algorithms · Computer Science 2018-10-05 Yong Tan

An efficient, scalable, and provably secure dynamic auditing scheme is highly desirable in the cloud storage environment for verifying the integrity of the outsourced data. Most of the existing work on remote integrity checking focuses on…

Cryptography and Security · Computer Science 2024-12-10 Tariqul Islam , Faisal Haque Bappy , Md Nafis Ul Haque Shifat , Farhan Ahmad , Kamrul Hasan , Tarannum Shaila Zaman

This paper presents an algorithm to automatically design two-level fat-tree networks, such as ones widely used in large-scale data centres and cluster supercomputers. The two levels may each use a different type of switches from design…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-01-29 Konstantin S. Solnushkin

We present a novel self-stabilizing algorithm for minimum spanning tree (MST) construction. The space complexity of our solution is $O(\log^2n)$ bits and it converges in $O(n^2)$ rounds. Thus, this algorithm improves the convergence time of…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-07-26 Lélia Blin , Shlomi Dolev , Maria Potop-Butucaru , Stephane Rovedakis

Classification trees continue to be widely adopted in machine learning applications due to their inherently interpretable nature and scalability. We propose a rolling subtree lookahead algorithm that combines the relative scalability of the…

Machine Learning · Computer Science 2023-04-24 Zeynel Batuhan Organ , Enis Kayış , Taghi Khaniyev

In this paper we propose a dynamic data structure that supports efficient algorithms for updating and querying singly connected Bayesian networks (causal trees and polytrees). In the conventional algorithms, new evidence in absorbed in time…

Artificial Intelligence · Computer Science 2014-08-08 Arthur L. Delcher , Adam J. Grove , Simon Kasif , Judea Pearl

Assuming Zipf's Law to be accurate, we show that existing techniques for partially optimizing binary trees produce results that are approximately 10% worse than true optimal. We present a new approximate optimization technique that runs in…

Data Structures and Algorithms · Computer Science 2022-09-01 Matthew L. Ginsberg

We introduce the zip tree, a form of randomized binary search tree that integrates previous ideas into one practical, performant, and pleasant-to-implement package. A zip tree is a binary search tree in which each node has a numeric rank…

Data Structures and Algorithms · Computer Science 2022-02-23 Robert E. Tarjan , Caleb C. Levy , Stephen Timmel

The Li-Chao tree (LICT) was first introduced in lecture as an efficient data structure for dynamic lower envelope maintenance. In the years since, it has achieved widespread adoption within the competitive programming community, yet no…

Data Structures and Algorithms · Computer Science 2026-03-10 Chao Li

Many concurrent dictionary implementations are designed and optimized for read-mostly workloads with uniformly distributed keys, and often perform poorly on update-heavy workloads. In this work, we first present a concurrent (a,b)-tree, the…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-01-03 Anubhav Srivastava , Trevor Brown

Given a set $P$ of $n$ points that are moving in the plane, we consider the problem of computing a spanning tree for these moving points that does not change its combinatorial structure during the point movement. The objective is to…

Computational Geometry · Computer Science 2022-06-28 Haitao Wang , Yiming Zhao

Quantum computing is a popular topic in computer science, which has recently attracted many studies in various areas such as machine learning and network. However, the topic of quantum data structures seems neglected. There is an open…

Databases · Computer Science 2024-06-03 Hao Liu , Xiaotian You , Raymond Chi-Wing Wong

Owing to the characteristics of high density and unlimited write cycles, skyrmion racetrack memory (SK-RM) has demonstrated great potential as either the next-generation main memory or the last-level cache of processors with non-volatility.…

Hardware Architecture · Computer Science 2024-07-26 Yu-Shiang Tsai , Shuo-Han Chen , Martijn Noorlander , Kuan-Hsun Chen

This paper presents a general technique for optimally transforming any dynamic data structure that operates on atomic and indivisible keys by constant-time comparisons, into a data structure that handles unbounded-length keys whose…

Data Structures and Algorithms · Computer Science 2013-06-04 Amihood Amir , Gianni Franceschini , Roberto Grossi , Tsvi Kopelowitz , Moshe Lewenstein , Noa Lewenstein

We consider an index data structure for similar strings. The generalized suffix tree can be a solution for this. The generalized suffix tree of two strings $A$ and $B$ is a compacted trie representing all suffixes in $A$ and $B$. It has…

Data Structures and Algorithms · Computer Science 2013-05-09 Joong Chae Na , Heejin Park , Maxime Crochemore , Jan Holub , Costas S. Iliopoulos , Laurent Mouchard , Kunsoo Park

In this paper we generalize the definition of "Search Trees" (ST) to enable reference values other than the key of prior inserted nodes. The idea builds on the assumption an $n$-node AVL (or Red-Black) requires to assure $O(\log_2n)$…

Data Structures and Algorithms · Computer Science 2018-04-04 Saulo Queiroz