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Brain decoding, aiming to identify the brain states using neural activity, is important for cognitive neuroscience and neural engineering. However, existing machine learning methods for fMRI-based brain decoding either suffer from low…

Neurons and Cognition · Quantitative Biology 2022-10-13 Ziyuan Ye , Youzhi Qu , Zhichao Liang , Mo Wang , Quanying Liu

Convolution is a central operation in Convolutional Neural Networks (CNNs), which applies a kernel to overlapping regions shifted across the image. However, because of the strong correlations in real-world image data, convolutional kernels…

Recent achievements in implantable brain-computer interfaces (iBCIs) have demonstrated the potential to decode cognitive and motor behaviors with intracranial brain recordings; however, individual physiological and electrode implantation…

Neurons and Cognition · Quantitative Biology 2025-06-17 Di Wu , Linghao Bu , Yifei Jia , Lu Cao , Siyuan Li , Siyu Chen , Yueqian Zhou , Sheng Fan , Wenjie Ren , Dengchang Wu , Kang Wang , Yue Zhang , Yuehui Ma , Jie Yang , Mohamad Sawan

Neurons in the brain represent information in their collective activity. The fidelity of this neural population code depends on whether and how variability in the response of one neuron is shared with other neurons. Two decades of studies…

Neurons and Cognition · Quantitative Biology 2021-02-02 Rava Azeredo da Silveira , Fred Rieke

Mining human-brain networks to discover patterns that can be used to discriminate between healthy individuals and patients affected by some neurological disorder, is a fundamental task in neuroscience. Learning simple and interpretable…

Social and Information Networks · Computer Science 2020-06-11 Tommaso Lanciano , Francesco Bonchi , Aristides Gionis

Brain network is an important tool for understanding the brain, offering insights for scientific research and clinical diagnosis. Existing models for brain networks typically primarily focus on brain regions or overlook the complexity of…

Neurons and Cognition · Quantitative Biology 2024-05-30 Haoyu Hu , Hongrun Zhang , Chao Li

Brain decoding involves the determination of a subject's cognitive state or an associated stimulus from functional neuroimaging data measuring brain activity. In this setting the cognitive state is typically characterized by an element of a…

Machine Learning · Statistics 2015-04-14 Nicole Croteau , Farouk S. Nathoo , Jiguo Cao , Ryan Budney

The human brain is a complex network comprised of functionally and anatomically interconnected brain regions. A growing number of studies have suggested that empirical estimates of brain networks may be useful for discovery of biomarkers of…

Neurons and Cognition · Quantitative Biology 2022-11-15 Andrew Hannum , Mario A. Lopez , Saúl A. Blanco , Richard F. Betzel

This paper proposes a novel topological learning framework that integrates networks of different sizes and topology through persistent homology. Such challenging task is made possible through the introduction of a computationally efficient…

Neurons and Cognition · Quantitative Biology 2023-01-30 Tananun Songdechakraiwut , Moo K. Chung

Brain network provides important insights for the diagnosis of many brain disorders, and how to effectively model the brain structure has become one of the core issues in the domain of brain imaging analysis. Recently, various computational…

Neurons and Cognition · Quantitative Biology 2022-12-02 Zhengwang Xia , Tao Zhou , Saqib Mamoon , Amani Alfakih , Jianfeng Lu

In this thesis, we present robust and fully-automated methods for the subdivision of the entire human cerebral cortex based on connectivity information. Our contributions are four-fold: First, we propose a clustering approach to delineate a…

Neurons and Cognition · Quantitative Biology 2018-02-21 Salim Arslan

Learnable keypoint detectors and descriptors are beginning to outperform classical hand-crafted feature extraction methods. Recent studies on self-supervised learning of visual representations have driven the increasing performance of…

Computer Vision and Pattern Recognition · Computer Science 2022-07-12 Henrique Siqueira , Patrick Ruhkamp , Ibrahim Halfaoui , Markus Karmann , Onay Urfalioglu

Recently, visual encoding and decoding based on functional magnetic resonance imaging (fMRI) have realized many achievements with the rapid development of deep network computation. Despite the hierarchically similar representations of deep…

Neurons and Cognition · Quantitative Biology 2019-03-20 Kai Qiao , Jian Chen , Linyuan Wang , Chi Zhang , Lei Zeng , Li Tong , Bin Yan

Modern deep networks are highly complex and their inferential outcome very hard to interpret. This is a serious obstacle to their transparent deployment in safety-critical or bias-aware applications. This work contributes to post-hoc…

Computer Vision and Pattern Recognition · Computer Science 2023-10-10 Konstantinos P. Panousis , Sotirios Chatzis

Deep learning is leading to major advances in the realm of brain decoding from functional Magnetic Resonance Imaging (fMRI). However, the large inter-subject variability in brain characteristics has limited most studies to train models on…

Machine Learning · Computer Science 2023-12-12 Alexis Thual , Yohann Benchetrit , Felix Geilert , Jérémy Rapin , Iurii Makarov , Hubert Banville , Jean-Rémi King

Functional networks provide a topological description of activity patterns in the brain, as they stem from the propagation of neural activity on the underlying anatomical or structural network of synaptic connections. This latter is well…

Disordered Systems and Neural Networks · Physics 2021-02-11 Ali Safari , Paolo Moretti , Ibai Diez , Jesus M. Cortes , Miguel Ángel Muñoz

Network theory provides a principled abstraction of the human brain: reducing a complex system into a simpler representation from which to investigate brain organisation. Recent advancement in the neuroimaging field are towards representing…

Neurons and Cognition · Quantitative Biology 2016-03-23 A. W. Chung , M. D. Schirmer , M. L. Krishna , G. Ball , P. Aljabar , A. D. Edwards , G. Montana

The study of the visual system of the brain has attracted the attention and interest of many neuro-scientists, that derived computational models of some types of neuron that compose it. These findings inspired researchers in image…

Computer Vision and Pattern Recognition · Computer Science 2021-03-03 Nicola Strisciuglio

Encoding models are used for predicting brain activity in response to sensory stimuli with the objective of elucidating how sensory information is represented in the brain. Encoding models typically comprise a nonlinear transformation of…

Neurons and Cognition · Quantitative Biology 2017-03-13 Umut Güçlü , Marcel A. J. van Gerven

Convolutional neural network (CNN) driven by image recognition has been shown to be able to explain cortical responses to static pictures at ventral-stream areas. Here, we further showed that such CNN could reliably predict and decode…

Neurons and Cognition · Quantitative Biology 2017-11-15 Haiguang Wen , Junxing Shi , Yizhen Zhang , Kun-Han Lu , Jiayue Cao , Zhongming Liu