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Accurate segmentation of critical anatomical structures is at the core of medical image analysis. The main bottleneck lies in gathering the requisite expert-labeled image annotations in a scalable manner. Methods that permit to produce…

Computer Vision and Pattern Recognition · Computer Science 2020-07-09 Yuhang Lu , Weijian Li , Kang Zheng , Yirui Wang , Adam P. Harrison , Chihung Lin , Song Wang , Jing Xiao , Le Lu , Chang-Fu Kuo , Shun Miao

Purpose: To apply a convolutional neural network (CNN) to develop a system that segments intensity calibration phantom regions in computed tomography (CT) images, and to test the system in a large cohort to evaluate its robustness. Methods:…

Computer Vision and Pattern Recognition · Computer Science 2020-12-22 Keisuke Uemura , Yoshito Otake , Masaki Takao , Mazen Soufi , Akihiro Kawasaki , Nobuhiko Sugano , Yoshinobu Sato

In this work it is proposed a medical image segmentation pipeline for accurate bone segmentation from CT imaging. It is a two-step methodology, with a pre-segmentation step and a segmentation refinement step. First, the user performs a…

Medical Physics · Physics 2015-05-13 Manuel Pinheiro , J. L. Alves

Intervertebral disc disease, a prevalent ailment, frequently leads to intermittent or persistent low back pain, and diagnosing and assessing of this disease rely on accurate measurement of vertebral bone and intervertebral disc geometries…

Image and Video Processing · Electrical Eng. & Systems 2024-04-02 Jiasong Chen , Linchen Qian , Linhai Ma , Timur Urakov , Weiyong Gu , Liang Liang

Automatic segmentation of the liver and hepatic lesions is an important step towards deriving quantitative biomarkers for accurate clinical diagnosis and computer-aided decision support systems. This paper presents a method to automatically…

Tendon injuries like tendinopathies, full and partial thickness tears are prevalent, and the supraspinatus tendon (SST) is the most vulnerable ones in the rotator cuff. Early diagnosis of SST tendinopathies is of high importance and hard to…

Image and Video Processing · Electrical Eng. & Systems 2020-11-25 Mostafa Jahanifar , Neda Zamani Tajeddin , Meisam Hasani , Babak Shekarchi , Kamran Azema

Objective: Automated segmentation tools are useful for calculating kidney volumes rapidly and accurately. Furthermore, these tools have the power to facilitate large-scale image-based artificial intelligence projects by generating input…

Image and Video Processing · Electrical Eng. & Systems 2024-05-15 Lucas Aronson , Ruben Ngnitewe Massaa , Syed Jamal Safdar Gardezi , Andrew L. Wentland

Accurately segmenting 3D curvilinear structures in medical imaging remains challenging due to their complex geometry and the scarcity of diverse, large-scale datasets for algorithm development and evaluation. In this paper, we use dendritic…

Computer Vision and Pattern Recognition · Computer Science 2025-07-15 Leslie Gu , Jason Ken Adhinarta , Mikhail Bessmeltsev , Jiancheng Yang , Yongjie Jessica Zhang , Wenjie Yin , Daniel Berger , Jeff Lichtman , Hanspeter Pfister , Donglai Wei

3D image segmentation is a recent and crucial step in many medical analysis and recognition schemes. In fact, it represents a relevant research subject and a fundamental challenge due to its importance and influence. This paper provides a…

Image and Video Processing · Electrical Eng. & Systems 2022-07-22 Omar Boudraa

Developing automated and semi-automated solutions for reconstructing wiring diagrams of the brain from electron micrographs is important for advancing the field of connectomics. While the ultimate goal is to generate a graph of neuron…

Computer Vision and Pattern Recognition · Computer Science 2016-08-09 William Gray Roncal , Colin Lea , Akira Baruah , Gregory D. Hager

We present an approach for fully automatic urinary bladder segmentation in CT images with artificial neural networks in this study. Automatic medical image analysis has become an invaluable tool in the different treatment stages of…

Computer Vision and Pattern Recognition · Computer Science 2019-03-08 Christina Gsaxner , Peter M. Roth , Jürgen Wallner , Jan Egger

This paper presents a fully automatic and end-to-end optimised airway segmentation method for thoracic computed tomography, based on the U-Net architecture. We use a simple and low-memory 3D U-Net as backbone, which allows the method to…

Image and Video Processing · Electrical Eng. & Systems 2021-08-04 A. Garcia-Uceda , R. Selvan , Z. Saghir , H. A. W. M. Tiddens , M. de Bruijne

We propose a 3D convolutional neural network to simultaneously segment and detect cell nuclei in confocal microscopy images. Mirroring the co-dependency of these tasks, our proposed model consists of two serial components: the first part…

Image and Video Processing · Electrical Eng. & Systems 2018-09-07 Sundaresh Ram , Vicky T. Nguyen , Kirsten H. Limesand , Mert R. Sabuncu

Computer-aided medical image analysis plays a significant role in assisting medical practitioners for expert clinical diagnosis and deciding the optimal treatment plan. At present, convolutional neural networks (CNN) are the preferred…

Image and Video Processing · Electrical Eng. & Systems 2022-04-29 S Niyas , S J Pawan , M Anand Kumar , Jeny Rajan

The task of automatically segmenting 3-D surfaces representing boundaries of objects is important for quantitative analysis of volumetric images, and plays a vital role in biomedical image analysis. Recently, graph-based methods with a…

Computer Vision and Pattern Recognition · Computer Science 2018-01-10 Abhay Shah , Michael Abramoff , Xiaodong Wu

Brain extraction (skull stripping) is a challenging problem in neuroimaging. It is due to the variability in conditions from data acquisition or abnormalities in images, making brain morphology and intensity characteristics changeable and…

Computer Vision and Pattern Recognition · Computer Science 2022-01-31 Duy H. M. Nguyen , Duy M. Nguyen , Mai T. N. Truong , Thu Nguyen , Khanh T. Tran , Nguyen A. Triet , Pham T. Bao , Binh T. Nguyen

Vertebrae localization, segmentation and identification in CT images is key to numerous clinical applications. While deep learning strategies have brought to this field significant improvements over recent years, transitional and…

Image and Video Processing · Electrical Eng. & Systems 2022-06-27 Di Meng , Edmond Boyer , Sergi Pujades

Spine segmentation, based on ultrasound volume projection imaging (VPI), plays a vital role for intelligent scoliosis diagnosis in clinical applications. However, this task faces several significant challenges. Firstly, the global…

Computer Vision and Pattern Recognition · Computer Science 2025-10-31 Hao Xie , Zixun Huang , Yushen Zuo , Yakun Ju , Frank H. F. Leung , N. F. Law , Kin-Man Lam , Yong-Ping Zheng , Sai Ho Ling

3D ultrasound imaging shows great promise for scoliosis diagnosis thanks to its low-costing, radiation-free and real-time characteristics. The key to accessing scoliosis by ultrasound imaging is to accurately segment the bone area and…

Image and Video Processing · Electrical Eng. & Systems 2020-10-09 Zixun Huang , Li-Wen Wang , Frank H. F. Leung , Sunetra Banerjee , De Yang , Timothy Lee , Juan Lyu , Sai Ho Ling , Yong-Ping Zheng

CT and MRI are two of the most informative modalities in spinal diagnostics and treatment planning. CT is useful when analysing bony structures, while MRI gives information about the soft tissue. Thus, fusing the information of both…