Related papers: A Short Note on Undirected Fitch Graphs
An intense activity is nowadays devoted to the definition of models capturing the properties of complex networks. Among the most promising approaches, it has been proposed to model these graphs via their clique incidence bipartite graphs.…
Knowledge graph embedding involves learning representations of entities -- the vertices of the graph -- and relations -- the edges of the graph -- such that the resulting representations encode the known factual information represented by…
We introduce and study analogues of expander and hyperfinite graph sequences in the context of directed acyclic graphs, which we call "extender" and "hypershallow" graph sequences, respectively. Our main result is a probabilistic…
We prove that Legendrian and transverse links in overtwisted contact structures having overtwisted complements can be classified coarsely by their classical invariants. We further prove that any coarse equivalence class of loose links has…
A digraph is attached to any evolution algebra. This graph leads to some new purely algebraic results on this class of algebras and allows for some new natural proofs of known results. Nilpotency of an evolution algebra will be proved to be…
Recently, there has been a growing interest in the relationships between unrooted and rooted phylogenetic networks. In this context, a natural question to ask is if an unrooted phylogenetic network U can be oriented as a rooted phylogenetic…
Phylogenetic networks are becoming increasingly popular in phylogenetics since they have the ability to describe a wider range of evolutionary events than their tree counterparts. In this paper, we study Markov models on phylogenetic…
Given a finite connected bipartite graph, finite-dimensional indecomposable semisimple Leibniz algebras are constructed. Furthermore, any finite-dimensional indecomposable semisimple Leibniz algebra admits a similar construction.
Motivated by the question of which structural properties of a graph can be recovered from the chromatic symmetric function (CSF), we study the CSF of connected unicyclic graphs. While it is known that there can be non-isomorphic unicyclic…
Distance-hereditary graphs are known to be the graphs that are totally decomposable for the split decomposition. We characterise distance-hereditary graphs whose complement is also distance-hereditary by their split decomposition and by…
We associate to triangulations of infinite type surface a type of flip graph where simultaneous flips are allowed. Our main focus is on understanding exactly when two triangulations can be related by a sequence of flips. A consequence of…
In multivariate statistics, acyclic mixed graphs with directed and bidirected edges are widely used for compact representation of dependence structures that can arise in the presence of hidden (i.e., latent or unobserved) variables. Indeed,…
Federated graph learning collaboratively learns a global graph neural network with distributed graphs, where the non-independent and identically distributed property is one of the major challenges. Most relative arts focus on traditional…
Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of non-treelike evolutionary events, like recombination, hybridization, or lateral gene transfer. In this paper, we present and study a new…
By applying simplification operations to categories of multigraphs, several natural graph operations are shown to demonstrate categorical issues. The replacement of an undirected edge with a directed cycle for digraphs admits both a left…
Knowledge graphs are used to represent relational information in terms of triples. To enable learning about domains, embedding models, such as tensor factorization models, can be used to make predictions of new triples. Often there is…
I show how to associate a Clifford algebra to a graph. I describe the structure of these Clifford graph algebras and provide many examples and pictures. I describe which graphs correspond to isomorphic Clifford algebras and also discuss…
A connected undirected graph is called \emph{geodetic} if for every pair of vertices there is a unique shortest path connecting them. It has been conjectured that for finite groups, the only geodetic Cayley graphs are odd cycles and…
Phylogenetic networks are rooted acyclic directed graphs in which the leaves are identified with members of a set X of species. The cluster of a vertex is the set of leaves that are descendants of the vertex. A network is "distinct-cluster"…
Graphs with given k vertices generate an (acyclic) simplicial complex. We describe the homology of its quotient complex, formed by all connected graphs, and demonstrate its applications to the topology of braid groups, knot theory,…