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We present an unsupervised data processing workflow that is specifically designed to obtain a fast conformational clustering of long molecular dynamics simulation trajectories. In this approach we combine two dimensionality reduction…

Chemical Physics · Physics 2023-08-09 Simon Hunkler , Kay Diederichs , Oleksandra Kukharenko , Christine Peter

We propose a fast bivariate smoothing approach for symmetric surfaces that has a wide range of applications. We show how it can be applied to estimate the covariance function in longitudinal data as well as multiple additive covariances in…

Computation · Statistics 2016-09-23 Jona Cederbaum , Fabian Scheipl , Sonja Greven

We extend balloon and sample-smoothing estimators, two types of variable-bandwidth kernel density estimators, by a shift parameter and derive their asymptotic properties. Our approach facilitates the unified study of a wide range of density…

Methodology · Statistics 2015-12-11 Till Hoffmann , Nick S. Jones

In a number of problems in computational physics, a finite sum of kernel functions centered at $N$ particle locations located in a box in three dimensions must be extended by imposing periodic boundary conditions on box boundaries. Even…

Computational Physics · Physics 2015-06-17 Nail A. Gumerov , Ramani Duraiswami

I present two new methods for exactly summing a set of floating-point numbers, and then correctly rounding to the nearest floating-point number. Higher accuracy than simple summation (rounding after each addition) is important in many…

Numerical Analysis · Computer Science 2015-05-22 Radford M. Neal

Measuring similarity between incomplete data is a fundamental challenge in web mining, recommendation systems, and user behavior analysis. Traditional approaches either discard incomplete data or perform imputation as a preprocessing step,…

Machine Learning · Computer Science 2025-10-16 Yang Cao , Sikun Yang , Kai He , Wenjun Ma , Ming Liu , Yujiu Yang , Jian Weng

The Stable Diffusion Model (SDM) is a prevalent and effective model for text-to-image (T2I) and image-to-image (I2I) generation. Despite various attempts at sampler optimization, model distillation, and network quantification, these…

Computer Vision and Pattern Recognition · Computer Science 2024-06-18 Jinchao Zhu , Yuxuan Wang , Siyuan Pan , Pengfei Wan , Di Zhang , Gao Huang

As it stands, density matrix purification is a powerful tool for linear scaling electronic structure calculations. The convergence is rapid and depends only weakly on the band gap. However, as will be shown in this paper, there is room for…

Computational Physics · Physics 2011-05-11 Emanuel H. Rubensson

Frequent Subgraph Mining (FSM) is the key task in many graph mining and machine learning applications. Numerous systems have been proposed for FSM in the past decade. Although these systems show good performance for small patterns (with no…

Databases · Computer Science 2021-02-09 Peng Jiang , Rujia Wang , Bo Wu

Autoregressive models (ARMs) are hindered by slow sequential inference. While masked diffusion models (MDMs) offer a parallel alternative, they suffer from critical drawbacks: high computational overhead from precluding Key-Value (KV)…

Computation and Language · Computer Science 2026-03-06 Jia-Nan Li , Jian Guan , Wei Wu , Chongxuan Li

Kernel quantile regression (KQR) extends classical quantile regression to nonlinear settings using kernel methods, offering a powerful tool for modeling conditional distributions. However, its application to large-scale datasets remains…

Optimization and Control · Mathematics 2026-04-24 Shengxiang Deng , Xudong Li , Yangjing Zhang

Diffusion models have gained significant popularity in image generation tasks. However, generating high-quality content remains notably slow because it requires running model inference over many time steps. To accelerate these models, we…

Computer Vision and Pattern Recognition · Computer Science 2025-01-28 Zichen Fan , Steve Dai , Rangharajan Venkatesan , Dennis Sylvester , Brucek Khailany

We consider estimating the density of a response conditioning on an error-prone covariate. Motivated by two existing kernel density estimators in the absence of covariate measurement error, we propose a method to correct the existing…

Methodology · Statistics 2020-01-09 Xianzheng Huang , Haiming Zhou

Due to the rapid development of science and technology, the importance of imprecise, noisy, and uncertain data is increasing at an exponential rate. Thus, mining patterns in uncertain databases have drawn the attention of researchers.…

Recent image degradation estimation methods have enabled single-image super-resolution (SR) approaches to better upsample real-world images. Among these methods, explicit kernel estimation approaches have demonstrated unprecedented…

Computer Vision and Pattern Recognition · Computer Science 2023-11-01 Royson Lee , Rui Li , Stylianos I. Venieris , Timothy Hospedales , Ferenc Huszár , Nicholas D. Lane

This paper studies Kernel Density Estimation for a high-dimensional distribution $\rho(x)$. Traditional approaches have focused on the limit of large number of data points $n$ and fixed dimension $d$. We analyze instead the regime where…

Machine Learning · Computer Science 2024-10-21 Giulio Biroli , Marc Mézard

We introduce an accurate and efficient method for a class of nonlocal potential evaluations with free boundary condition, including the 3D/2D Coulomb, 2D Poisson and 3D dipolar potentials. Our method is based on a Gaussian-sum approximation…

Computational Physics · Physics 2016-12-09 Lukas Exl , Norbert J. Mauser , Yong Zhang

Coresets have emerged as a powerful tool to summarize data by selecting a small subset of the original observations while retaining most of its information. This approach has led to significant computational speedups but the performance of…

Statistics Theory · Mathematics 2020-12-10 Paxton Turner , Jingbo Liu , Philippe Rigollet

Many different simulation methods for Stokes flow problems involve a common computationally intense task -- the summation of a kernel function over $O(N^2)$ pairs of points. One popular technique is the Kernel Independent Fast Multipole…

Numerical Analysis · Mathematics 2021-09-07 Wen Yan , Robert Blackwell

While robust parameter estimation has been well studied in parametric density estimation, there has been little investigation into robust density estimation in the nonparametric setting. We present a robust version of the popular kernel…

Machine Learning · Statistics 2014-11-18 Robert A. Vandermeulen , Clayton D. Scott