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In this paper we discuss the applications of knotoids to modelling knots in open curves and produce new knotoid invariants. We show how invariants of knotoids generally give rise to well-behaved measures of how much an open curve is…

Geometric Topology · Mathematics 2023-06-14 Wout Moltmaker , Roland van der Veen

Ropelength and embedding thickness are related measures of geometric complexity of classical knots and links in Euclidean space. In their recent work, Freedman and Krushkal posed a question regarding lower bounds for embedding thickness of…

Geometric Topology · Mathematics 2020-01-14 R. Komendarczyk , A. Michaelides

The weights of a neural network are typically initialized at random, and one can think of the functions produced by such a network as having been generated by a prior over some function space. Studying random networks, then, is useful for a…

Machine Learning · Statistics 2018-11-28 Kevin K. Chen , Anthony C. Gamst , Alden K. Walker

In the first part of this work a summary is provided of some recent experiments and theoretical results which are relevant in the research of systems of polymer rings in nontrivial topological conformations. Next, some advances in modeling…

Soft Condensed Matter · Physics 2014-02-04 Yani Zhao , Franco Ferrari

We study RNA foldings and investigate their topology using a combination of knot theory and embedded rigid vertex graphs. Knot theory has been helpful in modeling biomolecules, but classical knots place emphasis on a biomolecule's…

Geometric Topology · Mathematics 2022-07-28 Jose Ceniceros , Mohamed Elhamdadi , Josef Komissar , Hitakshi Lahrani

We study random knots, which we define as a triple of random periodic functions (where a random function is a random trigonometric series, \[f(\theta) = \sum_{k=1}^\infty a_k \cos (k \theta) +b_k (\sin k \theta),\] with $a_k, b_k$ are…

Geometric Topology · Mathematics 2016-11-08 Igor Rivin

We explore free knot diagrams, which are projections of knots into the plane which don't record over/under data at crossings. We consider the combinatorial question of which free knot diagrams give which knots and with what probability.…

Geometric Topology · Mathematics 2020-11-25 Andrew Ducharme , Emily Peters

Data science offers a powerful tool to understand objects in multiple sciences. In this paper we utilize concept of data science, most notably topological data analysis, to extend our understanding of knot theory. This approach provides a…

Geometric Topology · Mathematics 2025-03-20 Pawel Dlotko , Davide Gurnari , Radmila Sazdanovic

Although most knots are nonalternating, modern research in knot theory seems to focus on alternating knots. We consider here nonalternating knots and their properties. Specifically, we show certain classes of knots have nontrivial Jones…

Geometric Topology · Mathematics 2009-07-13 Neil R. Nicholson

Semiflexible polymer models are widely used as a paradigm to understand structural phases in biomolecules including folding of proteins. Since stable knots are not so common in real proteins, the existence of stable knots in semiflexible…

Soft Condensed Matter · Physics 2021-07-14 Suman Majumder , Martin Marenz , Subhajit Paul , Wolfhard Janke

We study numerically the tightness of prime flat knots in a model of self-attracting polymers with excluded volume. We find that these knots are localised in the high temperature swollen regime, but become delocalised in the low temperature…

Soft Condensed Matter · Physics 2009-11-07 E. Orlandini , A. L. Stella , C. Vanderzande

Knots are familiar entities that appear at a captivating nexus of art, technology, mathematics, and science. As topologically stable objects within field theories, they have been speculatively proposed as explanations for diverse persistent…

Simple closed curves in the plane can be mapped to nontrivial knots under the action of origami foldings that allow the paper to self-intersect. We show all tame knot types may be produced in this manner, motivating the development of a new…

Geometric Topology · Mathematics 2021-05-05 Joseph Slote , Thomas Bertschinger

Streamlines, vortex lines and magnetic flux tubes in turbulent fluids and plasmas display a great amount of coiling, twisting and linking, raising the question as to whether their topological complexity (continually created and destroyed by…

Fluid Dynamics · Physics 2019-07-09 R. G. Cooper , M. Mesgarnezhad , A. W. Baggaley , C. F. Barenghi

We introduce and explore the relation between knot invariants and quiver representation theory, which follows from the identification of quiver quantum mechanics in D-brane systems representing knots. We identify various structural…

High Energy Physics - Theory · Physics 2020-05-29 Piotr Kucharski , Markus Reineke , Marko Stosic , Piotr Sułkowski

The aim of this paper is to realise the techniques of picture-valued invariants and invariants valued in free groups for long knots in the full torus. Such knots and links are of a particular interest because of their relation to Legendrian…

Algebraic Topology · Mathematics 2021-09-16 Sera Kim , Seongjeong Kim , Vassily Olegovich Manturov

We investigate several conjectures in geometric topology by assembling computer data obtained by studying weaving knots, a doubly infinite family $W(p,n)$ of examples of hyperbolic knots. In particular, we compute some important polynomial…

Geometric Topology · Mathematics 2019-05-09 Rama Mishra , Ross Staffeldt

Recent progress in string theory has led to a reformulation of quantum-group polynomial invariants for knots and links into new polynomial invariants whose coefficients can be understood in topological terms. We describe in detail how to…

Quantum Algebra · Mathematics 2007-05-23 Jose M. F. Labastida , Marcos Marino

We summarize recent work on a combinatorial knot invariant called knot contact homology. We also discuss the origins of this invariant in symplectic topology, via holomorphic curves and a conormal bundle naturally associated to the knot.

Symplectic Geometry · Mathematics 2009-03-13 Lenhard Ng

The problem of finding robust and effective methods for locating entanglement in embedded curves is relevant to both applications and theoretical investigations. Rather than focusing on an exact determination, we introduce the knot…

Geometric Topology · Mathematics 2022-11-23 Agnese Barbensi , Daniele Celoria