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Convolutional networks are ubiquitous in deep learning. They are particularly useful for images, as they reduce the number of parameters, reduce training time, and increase accuracy. However, as a model of the brain they are seriously…

Machine Learning · Computer Science 2022-01-19 Roman Pogodin , Yash Mehta , Timothy P. Lillicrap , Peter E. Latham

Deep convolutional neural networks (CNNs) have shown excellent performance in object recognition tasks and dense classification problems such as semantic segmentation. However, training deep neural networks on large and sparse datasets is…

Computer Vision and Pattern Recognition · Computer Science 2017-12-25 Lorenz Berger , Eoin Hyde , M. Jorge Cardoso , Sebastien Ourselin

Gene finding is the task of identifying the locations of coding sequences within the vast amount of genetic code contained in the genome. With an ever increasing quantity of raw genome sequences, gene finding is an important avenue towards…

Genomics · Quantitative Biology 2025-05-07 Frederikke I. Marin , Dennis Pultz , Wouter Boomsma

Neural machine translation is a recently proposed approach to machine translation. Unlike the traditional statistical machine translation, the neural machine translation aims at building a single neural network that can be jointly tuned to…

Computation and Language · Computer Science 2016-05-23 Dzmitry Bahdanau , Kyunghyun Cho , Yoshua Bengio

This paper explores interpretability techniques for two of the most successful learning algorithms in medical decision-making literature: deep neural networks and random forests. We applied these algorithms in a real-world medical dataset…

Machine Learning · Computer Science 2020-02-24 Catarina Moreira , Renuka Sindhgatta , Chun Ouyang , Peter Bruza , Andreas Wichert

In human perception and cognition, a fundamental operation that brains perform is interpretation: constructing coherent neural states from noisy, incomplete, and intrinsically ambiguous evidence. The problem of interpretation is well…

Machine Learning · Computer Science 2019-09-30 Michael Iuzzolino , Yoram Singer , Michael C. Mozer

Semantic matching is of central importance to many natural language tasks \cite{bordes2014semantic,RetrievalQA}. A successful matching algorithm needs to adequately model the internal structures of language objects and the interaction…

Computation and Language · Computer Science 2015-03-12 Baotian Hu , Zhengdong Lu , Hang Li , Qingcai Chen

Convolutional Neural Networks (CNNs) are propelling advances in a range of different computer vision tasks such as object detection and object segmentation. Their success has motivated research in applications of such models for medical…

Computer Vision and Pattern Recognition · Computer Science 2020-10-19 Kristoffer Wickstrøm , Michael Kampffmeyer , Robert Jenssen

Existing machine translation decoding algorithms generate translations in a strictly monotonic fashion and never revisit previous decisions. As a result, earlier mistakes cannot be corrected at a later stage. In this paper, we present a…

Computation and Language · Computer Science 2018-04-17 Roman Novak , Michael Auli , David Grangier

This paper aims to quantitatively explain rationales of each prediction that is made by a pre-trained convolutional neural network (CNN). We propose to learn a decision tree, which clarifies the specific reason for each prediction made by…

Computer Vision and Pattern Recognition · Computer Science 2019-02-26 Quanshi Zhang , Yu Yang , Haotian Ma , Ying Nian Wu

Numerous important problems can be framed as learning from graph data. We propose a framework for learning convolutional neural networks for arbitrary graphs. These graphs may be undirected, directed, and with both discrete and continuous…

Machine Learning · Computer Science 2016-06-09 Mathias Niepert , Mohamed Ahmed , Konstantin Kutzkov

This paper proposes a new paradigm for learning a set of independent logical rules in disjunctive normal form as an interpretable model for classification. We consider the problem of learning an interpretable decision rule set as training a…

Machine Learning · Computer Science 2021-03-15 Litao Qiao , Weijia Wang , Bill Lin

Automated design methods for convolutional neural networks (CNNs) have recently been developed in order to increase the design productivity. We propose a neuroevolution method capable of evolving and optimizing CNNs with respect to the…

Neural and Evolutionary Computing · Computer Science 2019-10-16 Filip Badan , Lukas Sekanina

This paper examines three generic strategies for improving the performance of neuro-evolution techniques aimed at evolving convolutional neural networks (CNNs). These were implemented as part of the Evolutionary eXploration of Augmenting…

Neural and Evolutionary Computing · Computer Science 2018-11-21 Travis Desell

Deep learning with convolutional neural networks (ConvNets) have dramatically improved learning capabilities of computer vision applications just through considering raw data without any prior feature extraction. Nowadays, there is rising…

Signal Processing · Electrical Eng. & Systems 2019-07-15 Apdullah Yayık , Yakup Kutlu , Gökhan Altan

Convolutional Neural Networks (CNNs) do not have a predictable recognition behavior with respect to the input resolution change. This prevents the feasibility of deployment on different input image resolutions for a specific model. To…

Computer Vision and Pattern Recognition · Computer Science 2020-07-14 Duo Li , Anbang Yao , Qifeng Chen

Interpretability of deep learning is widely used to evaluate the reliability of medical imaging models and reduce the risks of inaccurate patient recommendations. For models exceeding human performance, e.g. predicting RNA structure from…

Quantitative Methods · Quantitative Biology 2022-08-31 Mara Graziani , Niccolò Marini , Nicolas Deutschmann , Nikita Janakarajan , Henning Müller , María Rodríguez Martínez

The capability of accurate prediction of protein functions and properties is essential in the biotechnology industry, e.g. drug development and artificial protein synthesis, etc. The main challenges of protein function prediction are the…

Quantitative Methods · Quantitative Biology 2021-12-02 Wei-Cheng Tseng , Po-Han Chi , Jia-Hua Wu , Min Sun

Explainable AI (XAI) is an active research area to interpret a neural network's decision by ensuring transparency and trust in the task-specified learned models. Recently, perturbation-based model analysis has shown better interpretation,…

Computer Vision and Pattern Recognition · Computer Science 2021-02-17 Mahesh Sudhakar , Sam Sattarzadeh , Konstantinos N. Plataniotis , Jongseong Jang , Yeonjeong Jeong , Hyunwoo Kim

Genomics are rapidly transforming medical practice and basic biomedical research, providing insights into disease mechanisms and improving therapeutic strategies, particularly in cancer. The ability to predict the future course of a…

Neural and Evolutionary Computing · Computer Science 2016-09-29 Safoora Yousefi , Congzheng Song , Nelson Nauata , Lee Cooper
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