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We present a detailed physiological model of the retina that includes the biochemistry and electrophysiology of phototransduction, neuronal electrical coupling, and the spherical geometry of the eye. The model is a parabolic-elliptic system…

Quantitative Methods · Quantitative Biology 2023-03-09 Belal Abuelnasr , Adam R. Stinchcombe

The free propagation of acoustic plane waves through cellular periodic materials is generally accompanied by a flow of mechanical energy across the adjacent cells. The paper focuses on the energy transport related to dispersive waves…

Classical Physics · Physics 2018-03-23 Andrea Bacigalupoa , Marco Lepidi

Electro-cortical activity in patients with epilepsy may show abnormal rhythmic transients in response to stimulation. Even when using the same stimulation parameters in the same patient, wide variability in the duration of transient…

Neurons and Cognition · Quantitative Biology 2017-05-08 Gerold Baier , Peter N Taylor , Yujiang Wang

Rapidly oscillating potentials with a vanishing time average have been used for a long time to trap charged particles in source-free regions. It has been argued that the motion of a particle in such a potential can be approximately…

Other Condensed Matter · Physics 2011-11-09 A. Ridinger , N. Davidson

The mechanisms and impact of correlated, or synchronous, firing among pairs and groups of neurons is under intense investigation throughout the nervous system. A ubiquitous circuit feature that can give rise to such correlations consists of…

Neurons and Cognition · Quantitative Biology 2015-03-19 Andrea K. Barreiro , Evan L. Thilo , Eric Shea-Brown

The feedback between mechanical and chemical signals plays a key role in controlling many biological processes and collective cell behavior. Here we focus on the emergence of spatiotemporal density waves in a one-dimensional "cell train."…

Biological Physics · Physics 2025-02-12 Toshi Parmar , Liam P. Dow , Beth L. Pruitt , M. Cristina Marchetti

Self-generated gradients have atttracted a lot of attention in the recent biological literature. It is considered as a robust strategy for a group of cells to find its way during a long journey. This note is intended to discuss various…

Analysis of PDEs · Mathematics 2021-09-15 Mete Demircigil , Vincent Calvez , Roxana Sublet

We aim to understand the formation of abnormal waves of activity from myocardial regions with diminished cell-to-cell coupling. In route to this goal, we studied the behavior of a heterogeneous myocyte network in which a sharp coupling…

Tissues and Organs · Quantitative Biology 2009-11-13 V. N. Biktashev , A. Arutunyan , N. A. Sarvazyan

Broadband spontaneous macroscopic neural oscillations are rhythmic cortical firing which were extensively examined during the last century, however, their possible origination is still controversial. In this work we show how macroscopic…

Neurons and Cognition · Quantitative Biology 2015-11-03 Amir Goldental , Roni Vardi , Shira Sardi , Pinhas Sabo , Ido Kanter

NMDA receptors (NMDA-R) typically contribute to excitatory synaptic transmission in the central nervous system. While calcium influx through NMDA-R plays a critical role in synaptic plasticity, experimental evidence indicates that…

Neurons and Cognition · Quantitative Biology 2020-02-03 David Gall , Geneviève Dupont

We reveal that the mechanical pulsation of locally synchronised particles is a generic route to propagate deformation waves. We consider a model of dense repulsive particles whose activity drives periodic change in size of each individual.…

Soft Condensed Matter · Physics 2023-12-12 Yiwei Zhang , Étienne Fodor

Neuroprosthesis, as one type of precision medicine device, is aiming for manipulating neuronal signals of the brain in a closed-loop fashion, together with receiving stimulus from the environment and controlling some part of our brain/body.…

Neurons and Cognition · Quantitative Biology 2020-01-14 Zhaofei Yu , Jian K. Liu , Shanshan Jia , Yichen Zhang , Yajing Zheng , Yonghong Tian , Tiejun Huang

Spontaneous photon bursts are observed in the output collected from a mesoscale semiconductor-based laser near the lasing threshold. Their appearence is compared to predictions obtained from Laser Rate Equations and from a Stochastic Laser…

Optics · Physics 2020-02-19 T. Wang , G. P. Puccioni , G. L. Lippi

Individual Neurons in the nervous systems exploit various dynamics. To capture these dynamics for single neurons, we tune the parameters of an electrophysiological model of nerve cells, to fit experimental data obtained by calcium imaging.…

Quantitative Methods · Quantitative Biology 2017-11-07 Magdalena Fuchs , Manuel Zimmer , Radu Grosu , Ramin M. Hasani

The concept of a cell$'$s receptive field is a bedrock in systems neuroscience, and the classical static description of the receptive field has had enormous success in explaining the fundamental mechanisms underlying visual processing.…

Neurons and Cognition · Quantitative Biology 2025-04-10 Ifedayo-EmmanuEL Adeyefa-Olasupo

For a number of starless cores, self-absorbed molecular line and column density observations have implied the presence of large-amplitude oscillations. We examine the consequences of these oscillations on the evolution of the cores and the…

Solar and Stellar Astrophysics · Physics 2015-05-19 Avery E. Broderick , Eric Keto

We present a new model for the dynamics of the presynaptic intracellular calcium concentration in neurons evoked by various stimulation protocols. The aim of the model is twofold: We want to discuss the calcium transients during and after…

Biological Physics · Physics 2007-05-23 Michael Meyer-Hermann , Frido Erler , Gerhard Soff

Mechanical oscillations are important for many cellular processes, e.g. the beating of cilia and flagella or the sensation of sound by hair cells. These dynamic states originate from spontaneous oscillations of molecular motors. A…

Biological Physics · Physics 2009-01-29 Stefan Gunther , Karsten Kruse

A number of factors, such as, cell-cell interactions and self-propulsion of cells driven by cytoskeletal forces determine tissue morphologies and dynamics. To explore the interplay between these factors in controlling the dynamics at the…

Soft Condensed Matter · Physics 2025-05-12 Rajsekhar Das , Xin Li , Sumit Sinha , D. Thirumalai

Background: Mechanotransduction in bone cells plays a pivotal role in osteoblast differentiation and bone remodelling. Mechanotransduction provides the link between modulation of the extracellular matrix and intracellular actions. By…

Subcellular Processes · Quantitative Biology 2019-02-26 Gianluca Ascolani , Timothy M. Skerry , Damien Lacroix , Enrico Dall'Ara , Aban Shuaib