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We discuss the structure and main features of the nonlinear evolution equation proposed by this author as the fundamental dynamical law within the framework of Quantum Thermodynamics. The nonlinear equation generates a dynamical group…

Quantum Physics · Physics 2010-07-20 Gian Paolo Beretta

The problem of evolutionary complexification of life is considered one of the fundamental aspects in contemporary evolutionary theory. Parasitism is ubiquitous, inevitable, and arises as soon as the first replicators appear, even during the…

Molecular Networks · Quantitative Biology 2024-01-01 Alexander Spirov

In the past years, a remarkable mapping has been found between the dynamics of a population of M individuals undergoing random mutations and selection, and that of a single system in contact with a thermal bath with temperature 1/M. This…

Statistical Mechanics · Physics 2015-07-28 Tommaso Brotto , Guy Bunin , Jorge Kurchan

Transient compartments have been recently shown to be able to maintain functional replicators in the context of prebiotic studies. Motivated by this experiment, we show that a broad class of selection dynamics is able to achieve this goal.…

Populations and Evolution · Quantitative Biology 2018-04-18 Alex Blokhuis , David Lacoste , Philippe Nghe , Luca Peliti

We justify rigorously the non-equilibrium-diffusion limit of the compressible Euler model coupled with a radiative transfer equation arising in radiation hydrodynamics. For general initial data, we establish the uniform existence of the…

Analysis of PDEs · Mathematics 2023-12-27 Qiangchang Ju , Lei Li , Zhengce Zhang

In this paper, we study a nonlinear system of first order partial differential equations describing the macroscopic behavior of an ensemble of interacting self-propelled rigid bodies. Such system may be relevant for the modelling of bird…

Analysis of PDEs · Mathematics 2022-10-31 Pierre Degond , Amic Frouvelle , Sara Merino-Aceituno , Ariane Trescases

I consider the non-equilibrium DC transport of electrons through a quantum system with a thermoelectric response. This system may be any nanostructure or molecule modeled by the nonlinear scattering theory which includes Hartree-like…

Mesoscale and Nanoscale Physics · Physics 2013-03-06 Robert S. Whitney

Due to the conventional distinction between ecological (rapid) and evolutionary (slow)timescales, ecological and population models to date have typically ignored the effects of evolution. Yet the potential for rapid evolutionary change has…

Populations and Evolution · Quantitative Biology 2012-11-20 Laura E. Jones , Stephen P. Ellner

Biological and social systems are structured at multiple scales, and the incentives of individuals who interact in a group may diverge from the collective incentive of the group as a whole. Mechanisms to resolve this tension are responsible…

Populations and Evolution · Quantitative Biology 2023-05-31 Daniel B. Cooney , Simon A. Levin , Yoichiro Mori , Joshua B. Plotkin

Nonlinearity and non-Hermiticity, for example due to environmental gain-loss processes, are a common occurrence throughout numerous areas of science and lie at the root of many remarkable phenomena. For the latter, parity-time-reflection…

Biological Physics · Physics 2025-04-03 Alexander Felski , Flore K. Kunst

Thermodynamics is commonly presented as a theory of macroscopic systems in stable equilibrium, built upon assumptions of extensivity and scaling with system size. In this paper, we present a universal formulation of the elementary…

Quantum Physics · Physics 2026-03-26 Gian Paolo Beretta

Development of thermodynamic induction up to second order gives a dynamical bifurcation for thermodynamic variables and allows for the prediction and detailed explanation of nonequilibrium phase transitions with associated spontaneous…

Statistical Mechanics · Physics 2021-10-07 S. N. Patitsas

Biological systems reach organizational complexity that far exceeds the complexity of any known inanimate objects. Biological entities undoubtedly obey the laws of quantum physics and statistical mechanics. However, is modern physics…

Other Quantitative Biology · Quantitative Biology 2018-02-26 Mikhail I. Katsnelson , Yuri I. Wolf , Eugene V. Koonin

In this paper, we discuss the fitness landscape evolution of permanent replicator systems using a hypothesis that the specific time of evolutionary adaptation of the system parameters is much slower than the time of internal evolutionary…

Populations and Evolution · Quantitative Biology 2019-11-11 Sergei Drozhzhin , Tatiana Yakushkina , Alexander Bratus

Entropy serves as a central observable in equilibrium thermodynamics. However, many biological and ecological systems operate far from thermal equilibrium. Here we show that entropy production can characterize the behavior of such…

Statistical Mechanics · Physics 2015-03-17 Benjamin Andrae , Jonas Cremer , Tobias Reichenbach , Erwin Frey

We consider one-dimensional, locally finite interacting particle systems with two conservation laws. The models have a family of stationary measures with product structure and we assume the existence of a uniform bound on the inverse of the…

Probability · Mathematics 2007-05-23 Benedek Valko

Understanding the thermodynamics of the duplication process is a fundamental step towards a comprehensive physical theory of biological systems. However, the immense complexity of real cells obscures the fundamental tensions between energy…

Statistical Mechanics · Physics 2018-12-07 Bernat Corominas-Murtra

We introduce a one-dimensional, hyperbolic model for non-Newtonian fluids with finite relaxation time, derived within the framework of Rational Extended Thermodynamics (RET). Unlike classical parabolic models, our formulation preserves…

Mathematical Physics · Physics 2025-08-08 Tommaso Ruggeri

Due to recent advances in synthetic biology and artificial life, the origin of life is currently a hot topic of research. We review the literature and argue that the two traditionally competing "replicator-first" and "metabolism-first"…

Artificial Intelligence · Computer Science 2013-11-21 Tom Froese , Nathaniel Virgo , Takashi Ikegami

With a view to connecting random mutation on the molecular level to punctuated equilibrium behavior on the phenotype level, we propose a new model for biological evolution, which incorporates random mutation and natural selection. In this…

Condensed Matter · Physics 2009-10-28 M. Y. Choi , H. Y. Lee , D. Kim , S. H. Park
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