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To improve the robustness of graph neural networks (GNN), graph structure learning (GSL) has attracted great interest due to the pervasiveness of noise in graph data. Many approaches have been proposed for GSL to jointly learn a clean graph…

Machine Learning · Computer Science 2023-07-06 Shaogao Lv , Gang Wen , Shiyu Liu , Linsen Wei , Ming Li

Node-link diagrams are a popular method for representing graphs that capture relationships between individuals, businesses, proteins, and telecommunication endpoints. However, node-link diagrams may fail to convey insights regarding graph…

Social and Information Networks · Computer Science 2023-09-20 Paul Rosen , Mustafa Hajij , Bei Wang

Recovering hidden graph-like structures from potentially noisy data is a fundamental task in modern data analysis. Recently, a persistence-guided discrete Morse-based framework to extract a geometric graph from low-dimensional data has…

Computational Geometry · Computer Science 2018-03-22 Tamal K. Dey , Jiayuan Wang , Yusu Wang

Compression and generalization are fundamentally related through Solomonoff induction and the minimum description length principle (MDL), which predict that simpler models generalize better when data arises from low-complexity…

Machine Learning · Computer Science 2026-05-14 Lukas Silvester Barth , Paulo von Petersenn

How can we best encode structured data into sequential form for use in large language models (LLMs)? In this work, we introduce a parameter-efficient method to explicitly represent structured data for LLMs. Our method, GraphToken, learns an…

Machine Learning · Computer Science 2024-02-09 Bryan Perozzi , Bahare Fatemi , Dustin Zelle , Anton Tsitsulin , Mehran Kazemi , Rami Al-Rfou , Jonathan Halcrow

We introduce a permutation analogue of the celebrated Szemeredi Regularity Lemma, and derive a number of consequences. This tool allows us to provide a structural description of permutations which avoid a specified pattern, a result that…

Combinatorics · Mathematics 2007-05-23 Joshua N. Cooper

Physical and functional constraints on biological networks lead to complex topological patterns across multiple scales in their organization. A particular type of higher-order network feature that has received considerable interest is…

Quantitative Methods · Quantitative Biology 2024-10-15 Alexis Bénichou , Jean-Baptiste Masson , Christian L. Vestergaard

This paper proposes a scalable algorithmic framework for spectral reduction of large undirected graphs. The proposed method allows computing much smaller graphs while preserving the key spectral (structural) properties of the original…

Data Structures and Algorithms · Computer Science 2018-12-24 Zhiqiang Zhao , Yongyu Wang , Zhuo Feng

The first author together with Jenssen, Perkins and Roberts (2017) recently showed how local properties of the hard-core model on triangle-free graphs guarantee the existence of large independent sets, of size matching the best-known…

Combinatorics · Mathematics 2020-04-01 Ewan Davies , Ross J. Kang , François Pirot , Jean-Sébastien Sereni

Graphs are a widely used paradigm for representing non-Euclidean data, with applications ranging from social network analysis to biomolecular prediction. While graph learning has achieved remarkable progress, real-world graph data presents…

Real-world graphs can be difficult to interpret and visualize beyond a certain size. To address this issue, graph summarization aims to simplify and shrink a graph, while maintaining its high-level structure and characteristics. Most…

Social and Information Networks · Computer Science 2022-06-16 Dimitris Berberidis , Pierre J. Liang , Leman Akoglu

A new general decomposition theory inspired from modular graph decomposition is presented. This helps unifying modular decomposition on different structures, including (but not restricted to) graphs. Moreover, even in the case of graphs,…

Data Structures and Algorithms · Computer Science 2007-11-20 Binh-Minh Bui-Xuan , Michel Habib , Vincent Limouzy , Fabien De Montgolfier

A regular graph $G = (V,E)$ is an $(\varepsilon,\gamma)$ small-set expander if for any set of vertices of fractional size at most $\varepsilon$, at least $\gamma$ of the edges that are adjacent to it go outside. In this paper, we give a…

Computational Complexity · Computer Science 2022-11-18 Mark Braverman , Dor Minzer

The planar rigidity problem asks, given a set of m pairwise distances among a set P of n unknown points, whether it is possible to reconstruct P, up to a finite set of possibilities (modulo rigid motions of the plane). The celebrated…

Combinatorics · Mathematics 2008-12-05 Louis Theran

The most commonly used method to tackle the graph partitioning problem in practice is the multilevel approach. During a coarsening phase, a multilevel graph partitioning algorithm reduces the graph size by iteratively contracting nodes and…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-03-26 Henning Meyerhenke , Peter Sanders , Christian Schulz

The so-called motorcycle graph has been employed in recent years for various purposes in the context of structured and aligned block decomposition of 2D shapes and 2-manifold surfaces. Applications are in the fields of surface…

Graphics · Computer Science 2021-12-14 Hendrik Brückler , Ojaswi Gupta , Manish Mandad , Marcel Campen

Can one reduce the size of a graph without significantly altering its basic properties? The graph reduction problem is hereby approached from the perspective of restricted spectral approximation, a modification of the spectral similarity…

Data Structures and Algorithms · Computer Science 2019-01-01 Andreas Loukas

Machine learning on graphs is an important and ubiquitous task with applications ranging from drug design to friendship recommendation in social networks. The primary challenge in this domain is finding a way to represent, or encode, graph…

Social and Information Networks · Computer Science 2018-04-11 William L. Hamilton , Rex Ying , Jure Leskovec

Transformer-based large language models (LLMs) are comprised of billions of parameters arranged in deep and wide computational graphs, but it is not clear that they exploit their full capacity for all inputs. We introduce the s-Trace method…

Computation and Language · Computer Science 2026-05-27 Corentin Kervadec , Iuliia Lysova , Iuri Macocco , Marco Baroni , Gemma Boleda

Graph neural networks have become the default choice by practitioners for graph learning tasks such as graph classification and node classification. Nevertheless, popular graph neural network models still struggle to capture higher-order…

Machine Learning · Computer Science 2024-11-27 Davide Buffelli , Farzin Soleymani , Bastian Rieck