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The hierarchical organisation of cell identity is a fundamental feature of animal development with rich and well-characterized experimental phenomenology, yet the mechanisms driving its emergence remain unknown. The regulation of cell…

Cell Behavior · Quantitative Biology 2025-04-08 Anton Grishechkin , Abhirup Mukherjee , Omer Karin

Glaucoma is a progressive optic neuropathy characterized by structural damage to the optic nerve head and functional changes in the visual field. Detecting glaucoma early is crucial to preventing loss of eyesight. However, medical datasets…

Image and Video Processing · Electrical Eng. & Systems 2024-12-09 Youssof Nawar , Nouran Soliman , Moustafa Wassel , Mohamed ElHabebe , Noha Adly , Marwan Torki , Ahmed Elmassry , Islam Ahmed

Brain development during adolescence is marked by substantial changes in brain structure and function, leading to a stable network topology in adulthood. However, most prior work has examined the data through the lens of brain areas…

Quantitative Methods · Quantitative Biology 2016-12-26 Shi Gu , Muzhi Yang , John D. Medaglia , Ruben C. Gur , Raquel E. Gur , Theodore D. Satterthwaite , Danielle S. Bassett

Predicting genetic perturbations enables the identification of potentially crucial genes prior to wet-lab experiments, significantly improving overall experimental efficiency. Since genes are the foundation of cellular life, building gene…

Quantitative Methods · Quantitative Biology 2025-05-09 Changxi Chi , Jun Xia , Jingbo Zhou , Jiabei Cheng , Chang Yu , Stan Z. Li

Hallucinations and delusions are often grouped together within the positive symptoms of psychosis. However, recent evidence suggests they may be driven by distinct computational and neural mechanisms. Examining the time course of their…

We aim to understand the formation of abnormal waves of activity from myocardial regions with diminished cell-to-cell coupling. In route to this goal, we studied the behavior of a heterogeneous myocyte network in which a sharp coupling…

Tissues and Organs · Quantitative Biology 2009-11-13 V. N. Biktashev , A. Arutunyan , N. A. Sarvazyan

Superconducting optoelectronic loop neurons are a class of circuits potentially conducive to networks for large-scale artificial cognition. These circuits employ superconducting components including single-photon detectors, Josephson…

Neural and Evolutionary Computing · Computer Science 2022-10-19 Jeffrey M. Shainline , Bryce A. Primavera , Saeed Khan

Pigmentation abnormalities, ranging from hypo- to hyperpigmentation, can serve as biomarkers of developmental disruption in fish exposed to environmental contaminants. However, the mechanistic pathways underlying these alterations remain…

Quantitative Methods · Quantitative Biology 2026-01-21 Pranali Roy Chowdhury , Tian Xu Wang , Abbey MacDonald , Keith B. Tierney , Hao Wang

During asymmetric cell division, dynein generates forces, which position the spindle to reflect polarity and ensure correct daughter cell fates. The transient cortical localization of dynein raises the question of its targeting. We found…

Subcellular Processes · Quantitative Biology 2017-11-07 Ruddi Rodriguez Garcia , Laurent Chesneau , Sylvain Pastezeur , Julien Roul , Marc Tramier , Jacques Pécréaux

Neural network oscillations are a fundamental mechanism for cognition, perception and consciousness. Consequently, perturbations of network activity play an important role in the pathophysiology of brain disorders. When structural…

Neurons and Cognition · Quantitative Biology 2016-04-29 Timothée Proix , Fabrice Bartolomei , Maxime Guye , Viktor K. Jirsa

There is increasing evidence for specific cortical and subcortical large-scale human epileptic networks to be involved in the generation, spread, and termination of not only primary generalized but also focal onset seizures. The complex…

Neurons and Cognition · Quantitative Biology 2016-10-07 Christian Geier , Marie-Therese Kuhnert , Christian E. Elger , Klaus Lehnertz

Recent work on particle-based models of tissues has suggested that any finite rate of cell division and cell death is sufficient to fluidize an epithelial tissue. At the same time, experimental evidence has indicated the existence of glassy…

Soft Condensed Matter · Physics 2019-05-07 Michael Czajkowski , Daniel M. Sussman , M. Cristina Marchetti , M. Lisa Manning

Cortical pyramidal neurons have a complex dendritic anatomy, whose function is an active research field. In particular, the segregation between its soma and the apical dendritic tree is believed to play an active role in processing…

Neurons and Cognition · Quantitative Biology 2021-07-13 Fabian Schubert , Claudius Gros

Here we present HST WFPC2 imaging of 14 kinematically--distinct core ellipticals to examine their globular cluster systems. In particular, we probe the galaxy central regions, for which we might expect to see the strongest signatures of…

Astrophysics · Physics 2009-10-28 Duncan A. Forbes , Marijn Franx , Garth D. Illingworth , C. M. Carollo

Carbon atom vacancies in graphene give rise to a local magnetic moment of $\sigma+\pi$ origin, whose magnitude is yet uncertain and debated. Partial quenching of $\pi$ magnetism has been ubiquitously reported in periodic $first-principles$…

Materials Science · Physics 2023-02-27 Mirko Leccese , Rocco Martinazzo

Background: Investigation of the functioning of the brain in living systems has been a major effort amongst scientists and medical practitioners. Amongst the various disorder of the brain, epilepsy has drawn the most attention because this…

Medical Physics · Physics 2009-08-03 Md. Nurujjaman , Ramesh Naryanan , A. N. Sekar Iyengar

Most of the temporal lobe epilepsy detection approaches are based on hippocampus deformation and use complicated features, resulting, detection is done with complicated features extraction and pre-processing task. In this paper, a new…

Computer Vision and Pattern Recognition · Computer Science 2016-12-30 Zohreh Kohan , Hamidreza Farhidzadeh , Reza Azmi , Behrouz Gholizadeh

Electroencephalography (EEG) is a valuable clinical tool for grading injury caused by lack of blood and oxygen to the brain during birth. This study presents a novel end-to-end architecture, using a deep convolutional neural network, that…

Signal Processing · Electrical Eng. & Systems 2020-05-13 Sumit A. Raurale , Geraldine B. Boylan , Gordon Lightbody , John M. O'Toole

Since last 2 decades, High Frequency Oscillations (HFOs) are studied as a promising biomarker to localize the epileptogenic zone of patients with refractory focal epilepsy. As HFOs visual detection is time consuming and subjective,…

Signal Processing · Electrical Eng. & Systems 2023-01-23 Gaëlle Milon-Harnois , Nisrine Jrad , Daniel Schang , Patrick van Bogaert , Pierre Chauvet

Deep generative models have emerged as promising tools for detecting arbitrary anomalies in data, dispensing with the necessity for manual labelling. Recently, autoregressive transformers have achieved state-of-the-art performance for…

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