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This article presents a novel approach to solving the sparsity-constrained Orthogonal Nonnegative Matrix Factorization (SCONMF) problem, which requires decomposing a non-negative data matrix into the product of two lower-rank non-negative…

Data Structures and Algorithms · Computer Science 2025-04-07 Salar Basiri , Alisina Bayati , Srinivasa Salapaka

Numerous algorithms are used for nonnegative matrix factorization under the assumption that the matrix is nearly separable. In this paper, we show how to make these algorithms efficient for data matrices that have many more rows than…

Machine Learning · Computer Science 2018-01-08 Austin R. Benson , Jason D. Lee , Bartek Rajwa , David F. Gleich

Non-negative matrix factorization (NMF) is a natural model of admixture and is widely used in science and engineering. A plethora of algorithms have been developed to tackle NMF, but due to the non-convex nature of the problem, there is…

Machine Learning · Computer Science 2015-07-09 Rong Ge , James Zou

Identifying recurring patterns in high-dimensional time series data is an important problem in many scientific domains. A popular model to achieve this is convolutive nonnegative matrix factorization (CNMF), which extends classic…

Machine Learning · Computer Science 2019-07-02 Anthony Degleris , Ben Antin , Surya Ganguli , Alex H Williams

Deep matrix factorizations (deep MFs) are recent unsupervised data mining techniques inspired by constrained low-rank approximations. They aim to extract complex hierarchies of features within high-dimensional datasets. Most of the loss…

Machine Learning · Computer Science 2023-01-26 Pierre De Handschutter , Nicolas Gillis

Non-negative matrix factorization (NMF) is widely used for dimensionality reduction and interpretable analysis, but standard formulations are unsupervised and cannot directly exploit class labels. Existing supervised or semi-supervised…

Machine Learning · Computer Science 2025-10-14 Kenichi Satoh

Non-negative Matrix Factorization (NMF) asks to decompose a (entry-wise) non-negative matrix into the product of two smaller-sized nonnegative matrices, which has been shown intractable in general. In order to overcome this issue, the…

Data Structures and Algorithms · Computer Science 2019-07-15 Zhihuai Chen , Yinan Li , Xiaoming Sun , Pei Yuan , Jialin Zhang

The brain uses positive signals as a means of signaling. Forward interactions in the early visual cortex are also positive, realized by excitatory synapses. Only local interactions also include inhibition. Non-negative matrix factorization…

Machine Learning · Computer Science 2025-03-27 Mahbod Nouri , David Rotermund , Alberto Garcia-Ortiz , Klaus R. Pawelzik

Non-negative Matrix Factorization(NMF) algorithm can only be used to find low rank approximation of original non-negative data while Concept Factorization(CF) algorithm extends matrix factorization to single non-linear kernel space,…

Machine Learning · Computer Science 2024-10-29 Fei Li , Liang Du , Chaohong Ren

We present a hybrid method for latent information discovery on the data sets containing both text content and connection structure based on constrained low rank approximation. The new method jointly optimizes the Nonnegative Matrix…

Machine Learning · Computer Science 2017-03-29 Rundong Du , Barry Drake , Haesun Park

The paper discusses a pooling mechanism to induce subsampling in graph structured data and introduces it as a component of a graph convolutional neural network. The pooling mechanism builds on the Non-Negative Matrix Factorization (NMF) of…

Machine Learning · Computer Science 2019-09-10 Davide Bacciu , Luigi Di Sotto

We propose an efficient distributed out-of-memory implementation of the Non-negative Matrix Factorization (NMF) algorithm for heterogeneous high-performance-computing (HPC) systems. The proposed implementation is based on prior work on…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-14 Ismael Boureima , Manish Bhattarai , Maksim Eren , Erik Skau , Philip Romero , Stephan Eidenbenz , Boian Alexandrov

The separability assumption (Donoho & Stodden, 2003; Arora et al., 2012) turns non-negative matrix factorization (NMF) into a tractable problem. Recently, a new class of provably-correct NMF algorithms have emerged under this assumption. In…

Machine Learning · Statistics 2012-10-04 Abhishek Kumar , Vikas Sindhwani , Prabhanjan Kambadur

Nonnegative matrix factorization (NMF), which is the approximation of a data matrix as the product of two nonnegative matrices, is a key issue in machine learning and data analysis. One approach to NMF is to formulate the problem as a…

Optimization and Control · Mathematics 2016-11-02 Hideaki Iiduka , Shizuka Nishino

We propose a new variant of nonnegative matrix factorization (NMF), combining separability and sparsity assumptions. Separability requires that the columns of the first NMF factor are equal to columns of the input matrix, while sparsity…

Machine Learning · Computer Science 2020-06-16 Nicolas Nadisic , Arnaud Vandaele , Jeremy E. Cohen , Nicolas Gillis

Nonnegative matrix factorization (NMF) is a popular data embedding technique. Given a nonnegative data matrix $X$, it aims at finding two lower dimensional matrices, $W$ and $H$, such that $X\approx WH$, where the factors $W$ and $H$ are…

Machine Learning · Computer Science 2026-02-06 Olivier Vu Thanh , Nicolas Gillis

A novel approach to Boolean matrix factorization (BMF) is presented. Instead of solving the BMF problem directly, this approach solves a nonnegative optimization problem with the constraint over an auxiliary matrix whose Boolean structure…

Data Structures and Algorithms · Computer Science 2021-08-27 Duc P. Truong , Erik Skau , Derek Desantis , Boian Alexandrov

Given a matrix $M$ (not necessarily nonnegative) and a factorization rank $r$, semi-nonnegative matrix factorization (semi-NMF) looks for a matrix $U$ with $r$ columns and a nonnegative matrix $V$ with $r$ rows such that $UV$ is the best…

Numerical Analysis · Mathematics 2015-10-28 Nicolas Gillis , Abhishek Kumar

In this paper, we develop structure assisted nonnegative matrix factorization (NMF) methods for blind source separation of degenerate data. The motivation originates from nuclear magnetic resonance (NMR) spectroscopy, where a multiple…

Numerical Analysis · Mathematics 2021-03-10 Yuanchang Sun , Kai Huang , Jack Xin

Nonnegative matrix factorization (NMF) is a known unsupervised data-reduction method. The principle of the common cause (PCC) is a basic methodological approach in probabilistic causality, which seeks an independent mixture model for the…

Machine Learning · Computer Science 2025-09-09 E. Khalafyan , A. E. Allahverdyan , A. Hovhannisyan