Related papers: On the Parikh-de-Bruijn grid

A generalized de Bruijn digraph generalizes a de Bruijn digraph to the case where the number of vertices need not be a pure power of an integer. Hamiltonian cycles in these digraphs thus generalize regular de~Bruijn cycles, and we will thus…

This paper presents a method to find new De Bruijn cycles based on ones of lesser order. This is done by mapping a De Bruijn cycle to several vertex disjoint cycles in a De Bruijn digraph of higher order and connecting these cycles into one…

We present an algebraic construction of trace-based De Bruijn tori over finite fields, focusing on the nonzero variant that omits the all-zero pattern. The construction arranges nonzero field elements on a toroidal grid using two…

A de Bruijn sequence of order n over a k-symbol alphabet is a circular sequence where each length-n sequence occurs exactly once. We present a way of extending de Bruijn sequences by adding a new symbol to the alphabet: the extension is…

We study the Laplacian of the undirected De Bruijn graph over an alphabet $A$ of order $k$. While the eigenvalues of this Laplacian were found in 1998 by Delorme and Tillich [1], an explicit description of its eigenvectors has remained…

The de Bruijn torus (or grid) problem looks to find an $n$-by-$m$ binary matrix in which every possible $j$-by-$k$ submatrix appears exactly once. The existence and construction of these binary matrices was determined in the 70's, with…

Pangenomes serve as a framework for joint analysis of genomes of related organisms. Several pangenome models were proposed, offering different functionalities, applications provided by available tools, their efficiency etc. Among them, two…

A classical theorem of De Bruijn and Erd\H{o}s asserts that any noncollinear set of n points in the plane determines at least n distinct lines. We prove that an analogue of this theorem holds for graphs. Restricting our attention to…

The class of Parikh word representable graphs were recently introduced. In this work, we further develop its general theory beyond the binary alphabet. Our main result shows that this class is equivalent to the class of bipartite…

The de Bruijn graph, its sequences, and their various generalizations, have found many applications in information theory, including many new ones in the last decade. In this paper, motivated by a coding problem for emerging memory…

The focus of this work is to show how to combine Zech's logarithms and each of the cycle joining and cross-join pairing methods to construct binary de Bruijn sequences of any order. A basic implementation is supplied as a proof-of-concept.…

De novo DNA assembly is a fundamental task in Bioinformatics, and finding Eulerian paths on de Bruijn graphs is one of the dominant approaches to it. In most of the cases, there may be no one order for the de Bruijn graph that works well…

We present a Prym construction which associates abelian varieties to vertex-transitive strongly regular graphs. As an application we construct Prym-Tyurin varieties of arbitrary exponent $\geq 3$, generalizing a result by Lange, Recillas…

The paired de Bruijn graph is an extension of de Bruijn graph incorporating mate pair information for genome assembly proposed by Mevdedev et al. However, unlike in an ordinary de Bruijn graph, not every path or cycle in a paired de Bruijn…

We introduce jacobian graphs, which are explicit families of regular graphs that are spectrally indistinguishable from random graphs, but whose local structure is very different from that of random graphs. The construction relies on the…

This article investigates the properties of order-divisor graphs associated with finite groups. An order-divisor graph of a finite group is an undirected graph in which the set of vertices includes all elements of the group, and two…

Let $H$ be a finite abelian (commutative) group of order $n \geq 2$, and $m >1$ be an integer. We define the $m$-graph of $H$, denoted by $m-G(H)$, as a simple undirected graph with vertex set $H$, and two distinct vertices, $a, b \in H$,…

The de Bruijn graph $G_K$ of a set of strings $S$ is a key data structure in genome assembly that represents overlaps between all the $K$-length substrings of $S$. Construction and navigation of the graph is a space and time bottleneck in…

We study geometric presentations of braid groups for particles that are constrained to move on a graph, i.e. a network consisting of nodes and edges. Our proposed set of generators consists of exchanges of pairs of particles on junctions of…

We consider Laplace operators on periodic discrete graphs perturbed by guides, i.e., graphs which are periodic in some directions and finite in other ones. The spectrum of the Laplacian on the unperturbed graph is a union of a finite number…