English
Related papers

Related papers: A compressed dynamic self-index for highly repetit…

200 papers

Strings form a fundamental data type in computer systems. String searching has been extensively studied since the inception of computer science. Increasingly many applications have to deal with imprecise strings or strings with fuzzy…

Databases · Computer Science 2015-09-30 Sharma V. Thankachan , Manish Patil , Rahul Shah , Sudip Biswas

We present sparse topical coding (STC), a non-probabilistic formulation of topic models for discovering latent representations of large collections of data. Unlike probabilistic topic models, STC relaxes the normalization constraint of…

Machine Learning · Computer Science 2012-02-20 Jun Zhu , Eric P. Xing

In this paper, we describe a new type of match between a pattern and a text that aren't necessarily maximal in the query, but still contain useful matching information: locally maximal exact matches (LEMs). There are usually a large amount…

Data Structures and Algorithms · Computer Science 2025-05-22 Ahsan Sanaullah , Degui Zhi , Shaojie Zhang

It is a challenging and practical research problem to obtain effective compression of lengthy product titles for E-commerce. This is particularly important as more and more users browse mobile E-commerce apps and more merchants make the…

Computation and Language · Computer Science 2018-01-08 Jingang Wang , Junfeng Tian , Long Qiu , Sheng Li , Jun Lang , Luo Si , Man Lan

Inverted indexes allow to query large databases without needing to search in the database at each query. An important line of research is to construct the most efficient inverted indexes, both in terms of compression ratio and time…

Databases · Computer Science 2025-05-06 Yann Barsamian , André Chailloux

Tensor network methods provide a scalable solution to represent high-dimensional data. However, their efficacy is often limited by static, expert-defined structures that fail to adapt to evolving data correlations. We address this…

Computational Engineering, Finance, and Science · Computer Science 2026-03-31 Zheng Guo , Aditya Deshpande , Xinyu Wang , Brian C. Kiedrowski , Alex A. Gorodetsky

Similarity searching finds application in a wide variety of domains including multilingual databases, computational biology, pattern recognition and text retrieval. Similarity is measured in terms of a distance function, edit distance, in…

Databases · Computer Science 2007-05-23 Girish Motwani , Sandhya G. Nair

Suppose we have just performed searches in a self-index for two patterns $A$ and $B$ and now we want to search for their concatenation \A B); how can we best make use of our previous computations? In this paper we consider this problem and,…

Data Structures and Algorithms · Computer Science 2011-04-05 Travis Gagie , Kalle Karhu , Juha Kärkkäinen , Veli Mäkinen , Leena Salmela

Constrained codes are used to prevent errors from occurring in various data storage and data transmission systems. They can help in increasing the storage density of magnetic storage devices, in managing the lifetime of electronic storage…

Information Theory · Computer Science 2022-09-07 Ahmed Hareedy , Beyza Dabak , Robert Calderbank

Neural dependency parsing has proven very effective, achieving state-of-the-art results on numerous domains and languages. Unfortunately, it requires large amounts of labeled data, that is costly and laborious to create. In this paper we…

Computation and Language · Computer Science 2019-11-12 Guy Rotman , Roi Reichart

The suffix array is a classic full-text index, combining effectiveness with simplicity. We discuss three approaches aiming to improve its efficiency even more: changes to the navigation, data layout and adding extra data. In short, we show…

Data Structures and Algorithms · Computer Science 2016-07-28 Tomasz Kowalski , Szymon Grabowski , Kimmo Fredriksson , Marcin Raniszewski

To store and search genomic databases efficiently, researchers have recently started building compressed self-indexes based on grammars. In this paper we show how, given a straight-line program with $r$ rules for a string (S [1..n]) whose…

Data Structures and Algorithms · Computer Science 2012-09-28 Travis Gagie , Paweł Gawrychowski , Juha Kärkkäinen , Yakov Nekrich , Simon J. Puglisi

Practical data structures for the edit-sensitive parsing (ESP) are proposed. Given a string S, its ESP tree is equivalent to a context-free grammar G generating just S, which is represented by a DAG. Using the succinct data structures for…

Data Structures and Algorithms · Computer Science 2015-03-17 Naoya Kishiue , Masaya Nakahara , Shirou Maruyama , Hiroshi Sakamoto

Incorporating item content information into click-through rate (CTR) prediction models remains a challenge, especially with the time and space constraints of industrial scenarios. The content-encoding paradigm, which integrates user and…

Information Retrieval · Computer Science 2024-03-22 Qijiong Liu , Hengchang Hu , Jiahao Wu , Jieming Zhu , Min-Yen Kan , Xiao-Ming Wu

We study the design of efficient algorithms for combinatorial pattern matching. More concretely, we study algorithms for tree matching, string matching, and string matching in compressed texts.

Data Structures and Algorithms · Computer Science 2007-09-03 Philip Bille

The dictionary matching problem is to locate occurrences of any pattern among a set of patterns in a given text. Massive data sets abound and at the same time, there are many settings in which working space is extremely limited. We…

Data Structures and Algorithms · Computer Science 2013-01-29 Shoshana Marcus Dina Sokol

Similarity search approaches based on graph walks have recently attained outstanding speed-accuracy trade-offs, taking aside the memory requirements. In this paper, we revisit these approaches by considering, additionally, the memory…

Computer Vision and Pattern Recognition · Computer Science 2018-06-07 Matthijs Douze , Alexandre Sablayrolles , Hervé Jégou

The suffix array is an efficient data structure for in-memory pattern search. Suffix arrays can also be used for external-memory pattern search, via two-level structures that use an internal index to identify the correct block of suffix…

Data Structures and Algorithms · Computer Science 2013-03-27 Simon Gog , Alistair Moffat , J. Shane Culpepper , Andrew Turpin , Anthony Wirth

Recently, a novel coded compressed sensing (CCS) approach was proposed in [1] for dealing with the scalability problem for large sensing matrices in massive machine-type communications. The approach is to divide the compressed sensing (CS)…

Networking and Internet Architecture · Computer Science 2021-09-01 Yi-Jheng Lin , Chia-Ming Chang , Cheng-Shang Chang

Understanding protein dynamics are essential for deciphering protein functional mechanisms and developing molecular therapies. However, the complex high-dimensional dynamics and interatomic interactions of biological processes pose…

Quantitative Methods · Quantitative Biology 2025-05-15 Tiexin Qin , Mengxu Zhu , Chunyang Li , Terry Lyons , Hong Yan , Haoliang Li