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While existing mathematical descriptions can accurately account for phenomena at microscopic scales (e.g. molecular dynamics), these are often high-dimensional, stochastic and their applicability over macroscopic time scales of physical…

Machine Learning · Statistics 2016-09-08 P. S. Koutsourelakis , Elias Bilionis

Quantifying relevant interactions between neural populations is a prominent question in the analysis of high-dimensional neural recordings. However, existing dimension reduction methods often discuss communication in the absence of a formal…

Quantitative Methods · Quantitative Biology 2024-07-03 Amanda Merkley , Alice Y. Nam , Y. Kate Hong , Pulkit Grover

We introduce a novel data-driven approach to discover and decode features in the neural code coming from large population neural recordings with minimal assumptions, using cohomological feature extraction. We apply our approach to neural…

Neurons and Cognition · Quantitative Biology 2018-09-11 Erik Rybakken , Nils Baas , Benjamin Dunn

Cortical neurons whose activity is recorded in behavioral experiments has been classified into several types such as stimulus-related neurons, delay-period neurons, and reward-related neurons. Moreover, the population activity of neurons…

Neurons and Cognition · Quantitative Biology 2018-11-27 Takuma Tanaka

Estimating the likelihood, timing, and nature of events is a major goal of modeling stochastic dynamical systems. When the event is rare in comparison with the timescales of simulation and/or measurement needed to resolve the elemental…

Computational Physics · Physics 2023-06-14 John Strahan , Justin Finkel , Aaron R. Dinner , Jonathan Weare

Obtaining dynamic models of continuum soft robots is central to the analysis and control of soft robots, and researchers have devoted much attention to the challenge of proposing both data-driven and first-principle solutions. Both avenues…

Robotics · Computer Science 2025-02-21 Ricardo Valadas , Maximilian Stölzle , Jingyue Liu , Cosimo Della Santina

Dynamical systems are used to model a variety of phenomena in which the bifurcation structure is a fundamental characteristic. Here we propose a statistical machine-learning approach to derive lowdimensional models that automatically…

Quantitative Methods · Quantitative Biology 2015-06-11 Yohei Kondo , Kunihiko Kaneko , Shuji Ishihara

This work proposes a Stochastic Variational Deep Kernel Learning method for the data-driven discovery of low-dimensional dynamical models from high-dimensional noisy data. The framework is composed of an encoder that compresses…

Machine Learning · Computer Science 2023-06-28 Nicolò Botteghi , Mengwu Guo , Christoph Brune

The availability of large-scale neuronal population datasets necessitates new methods to model population dynamics and extract interpretable, scientifically translatable insights. Existing deep learning methods often overlook the biological…

Neurons and Cognition · Quantitative Biology 2024-11-14 Parsa Delavari , Ipek Oruc , Timothy H Murphy

In the wild, we often encounter collections of sequential data such as electrocardiograms, motion capture, genomes, and natural language, and sequences may be multichannel or symbolic with nonlinear dynamics. We introduce a new method to…

Machine Learning · Computer Science 2024-06-12 Jonathan Y. Zhou , Yao Xie

Deep neural networks are increasingly being used in cognitive modeling as a means of deriving representations for complex stimuli such as images. While the predictive power of these networks is high, it is often not clear whether they also…

Neurons and Cognition · Quantitative Biology 2020-06-01 Aditi Jha , Joshua Peterson , Thomas L. Griffiths

We describe a novel method for modeling non-stationary multivariate time series, with time-varying conditional dependencies represented through dynamic networks. Our proposed approach combines traditional multi-scale modeling and network…

Methodology · Statistics 2017-12-25 Xinyu Kang , Apratim Ganguly , Eric D. Kolaczyk

Neural signals are characterized by rich temporal and spatiotemporal dynamics that reflect the organization of cortical networks. Theoretical research has shown how neural networks can operate at different dynamic ranges that correspond to…

Neurons and Cognition · Quantitative Biology 2017-07-05 Luca Ambrogioni , Marcel A. J. van Gerven , Eric Maris

Deep neural networks are typically trained by uniformly sampling large datasets across epochs, despite evidence that not all samples contribute equally throughout learning. Recent work shows that progressively reducing the amount of…

Machine Learning · Computer Science 2026-04-15 Amar Gahir , Varshil Patel , Shreyank N Gowda

It is well known that a sparsely coded network in which the activity level is extremely low has intriguing equilibrium properties. In the present work, we study the dynamical properties of a neural network designed to store sparsely coded…

Disordered Systems and Neural Networks · Physics 2009-10-31 Katsunori Kitano , Toshio Aoyagi

Modeling neural population dynamics underlying noisy single-trial spiking activities is essential for relating neural observation and behavior. A recent non-recurrent method - Neural Data Transformers (NDT) - has shown great success in…

Neurons and Cognition · Quantitative Biology 2022-06-13 Trung Le , Eli Shlizerman

In this paper, we consider multivariate response regression models with high dimensional predictor variables. One way to model the correlation among the response variables is through the low rank decomposition of the coefficient matrix,…

Methodology · Statistics 2015-08-06 Ruiyan Luo , Xin Qi

Spatiotemporal dynamics is central to a wide range of applications from climatology, computer vision to neural sciences. From temporal observations taken on a high-dimensional vector of spatial locations, we seek to derive knowledge about…

Methodology · Statistics 2016-04-19 Lu Meng , Tian Zheng

To understand how neural networks process information, it is important to investigate how neural network dynamics varies with respect to different stimuli. One challenging task is to design efficient statistical approaches to analyze…

Neurons and Cognition · Quantitative Biology 2018-11-30 Zhi-Qin John Xu , Douglas Zhou , David Cai

Network representation learning, as an approach to learn low dimensional representations of vertices, has attracted considerable research attention recently. It has been proven extremely useful in many machine learning tasks over large…

Machine Learning · Computer Science 2019-06-11 Hao Peng , Jianxin Li , Hao Yan , Qiran Gong , Senzhang Wang , Lin Liu , Lihong Wang , Xiang Ren
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