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Cellular nuclei recognition serves as a fundamental and essential step in the workflow of digital pathology. However, with disparate source organs and staining procedures among histology image clusters, the scanned tiles inherently conform…

Quantitative Methods · Quantitative Biology 2024-07-22 Jianan Fan , Dongnan Liu , Canran Li , Hang Chang , Heng Huang , Filip Braet , Mei Chen , Weidong Cai

Pooling multiple neuroimaging datasets across institutions often enables improvements in statistical power when evaluating associations (e.g., between risk factors and disease outcomes) that may otherwise be too weak to detect. When there…

Machine Learning · Computer Science 2022-03-30 Vishnu Suresh Lokhande , Rudrasis Chakraborty , Sathya N. Ravi , Vikas Singh

Optimal transport distances are powerful tools to compare probability distributions and have found many applications in machine learning. Yet their algorithmic complexity prevents their direct use on large scale datasets. To overcome this…

Machine Learning · Statistics 2021-10-14 Kilian Fatras , Younes Zine , Rémi Flamary , Rémi Gribonval , Nicolas Courty

Biomedical images are noisy. The imaging equipment itself has physical limitations, and the consequent experimental trade-offs between signal-to-noise ratio, acquisition speed, and imaging depth exacerbate the problem. Denoising is,…

Image and Video Processing · Electrical Eng. & Systems 2020-11-11 Mikhail Papkov , Kenny Roberts , Lee Ann Madissoon , Omer Bayraktar , Dmytro Fishman , Kaupo Palo , Leopold Parts

We propose a cell segmentation method for analyzing images of densely clustered cells. The method combines the strengths of marker-controlled watershed transformation and a convolutional neural network (CNN). We demonstrate the method…

Image and Video Processing · Electrical Eng. & Systems 2020-04-06 Filip Lux , Petr Matula

Neural models learn representations of high-dimensional data on low-dimensional manifolds. Multiple factors, including stochasticities in the training process, model architectures, and additional inductive biases, may induce different…

Machine Learning · Computer Science 2025-12-02 Hanlin Yu , Berfin Inal , Georgios Arvanitidis , Soren Hauberg , Francesco Locatello , Marco Fumero

Person re-identification (re-id) aims to match pedestrians observed by disjoint camera views. It attracts increasing attention in computer vision due to its importance to surveillance system. To combat the major challenge of cross-view…

Computer Vision and Pattern Recognition · Computer Science 2017-09-08 Lin Wu , Yang Wang , Junbin Gao , Xue Li

Image inpainting is the task of filling-in missing regions of a damaged or incomplete image. In this work we tackle this problem not only by using the available visual data but also by incorporating image semantics through the use of…

Computer Vision and Pattern Recognition · Computer Science 2018-12-05 Patricia Vitoria , Joan Sintes , Coloma Ballester

In light of the inherent entailment relations between images and text, hyperbolic point vector embeddings, leveraging the hierarchical modeling advantages of hyperbolic space, have been utilized for visual semantic representation learning.…

Artificial Intelligence · Computer Science 2024-08-21 Zhi Qiao , Linbin Han , Xiantong Zhen , Jia-Hong Gao , Zhen Qian

We present a weakly supervised deep learning method to perform instance segmentation of cells present in microscopy images. Annotation of biomedical images in the lab can be scarce, incomplete, and inaccurate. This is of concern when…

Computer Vision and Pattern Recognition · Computer Science 2019-08-28 Fidel A. Guerrero-Peña , Pedro D. Marrero Fernandez , Tsang Ing Ren , Alexandre Cunha

Domain shift, the mismatch between training and testing data characteristics, causes significant degradation in the predictive performance in multi-source imaging scenarios. In medical imaging, the heterogeneity of population, scanners and…

Machine Learning · Computer Science 2021-12-21 Rongguang Wang , Pratik Chaudhari , Christos Davatzikos

Robustness against image perturbations bounded by a $\ell_p$ ball have been well-studied in recent literature. Perturbations in the real-world, however, rarely exhibit the pixel independence that $\ell_p$ threat models assume. A recently…

Machine Learning · Computer Science 2023-05-11 Edward J. Hu , Adith Swaminathan , Hadi Salman , Greg Yang

Unlike ordinary computer vision tasks that focus more on the semantic content of images, the image manipulation detection task pays more attention to the subtle information of image manipulation. In this paper, the noise image extracted by…

Computer Vision and Pattern Recognition · Computer Science 2022-07-05 Zhongyuan Zhang , Yi Qian , Yanxiang Zhao , Lin Zhu , Jinjin Wang

Deep learning holds immense promise for transforming medical image analysis, yet its clinical generalization remains profoundly limited. A major barrier is data heterogeneity. This is particularly true in Magnetic Resonance Imaging, where…

Computer Vision and Pattern Recognition · Computer Science 2025-12-09 Mehmet Yigit Avci , Pedro Borges , Virginia Fernandez , Paul Wright , Mehmet Yigitsoy , Sebastien Ourselin , Jorge Cardoso

Several state-of-the-art neural graph embedding methods are based on short random walks (stochastic processes) because of their ease of computation, simplicity in capturing complex local graph properties, scalability, and interpretibility.…

Machine Learning · Computer Science 2020-07-30 Charu Sharma , Jatin Chauhan , Manohar Kaul

Spectral embedding finds vector representations of the nodes of a network, based on the eigenvectors of a properly constructed matrix, and has found applications throughout science and technology. Many networks are multipartite, meaning…

Methodology · Statistics 2025-10-27 Alexander Modell , Ian Gallagher , Joshua Cape , Patrick Rubin-Delanchy

The increasing realism of generated images has raised significant concerns about their potential misuse, necessitating robust detection methods. Current approaches mainly rely on training binary classifiers, which depend heavily on the…

Computer Vision and Pattern Recognition · Computer Science 2025-11-04 Yonggang Zhang , Jun Nie , Xinmei Tian , Mingming Gong , Kun Zhang , Bo Han

In this paper, we address the classification of instances each characterized not by a singular point, but by a distribution on a vector space. We employ the Wasserstein metric to measure distances between distributions, which are then used…

Machine Learning · Statistics 2024-05-27 Jia Li , Lin Lin

During neurosurgical operations, surgeons can decide to acquire intraoperative data to better proceed with the removal of a tumor. A valid option is given by ultrasound (US) imaging, which can be easily obtained at subsequent surgical…

Image and Video Processing · Electrical Eng. & Systems 2020-01-13 Luca Canalini , Jan Klein , Dorothea Miller , Ron Kikinis

High-dimensional data often exhibit hierarchical structures in both modes: samples and features. Yet, most existing approaches for hierarchical representation learning consider only one mode at a time. In this work, we propose an…

Machine Learning · Computer Science 2025-10-23 Ya-Wei Eileen Lin , Ronald R. Coifman , Gal Mishne , Ronen Talmon