Related papers: $k$-Foldability of Words
Let $\gamma_{a,b}(n)$ be the number of smooth words of length $n$ over the alphabet $\{a,b\}$ with $a<b$. Say that a smooth word $w$ is \emph{left fully extendable} (LFE) if both $aw$ and $bw$ are smooth. In this paper, we prove that for…
Phylogenetic trees play a key role in the reconstruction of evolutionary relationships. Typically, they are derived from aligned sequence data (like DNA, RNA, or proteins) by using optimization criteria like, e.g., maximum parsimony (MP).…
Let $\mb w$ be a morphic word over a finite alphabet $\Sigma$, and let $\Delta$ be a nonempty subset of $\Sigma$. We study the behavior of maximal blocks consisting only of letters from $\Delta$ in $\mb w$, and prove the following: let…
We investigate the computational power of periodically iterated morphisms, also known as D0L systems with periodic control, PD0L systems for short. These systems give rise to a class of one-sided infinite sequences, called PD0L words. We…
A correlation is a binary vector that encodes all possible positions of overlaps of two words, where an overlap for an ordered pair of words (u,v) occurs if a suffix of word u matches a prefix of word v. As multiple pairs can have the same…
A graph $G=(V,E)$ is said to be word-representable if there exists a word $w$ over the alphabet $V$ such that two distinct letters $x,y\in V$ alternate in $w$ if and only if $xy \in E$. Word-representable graphs form a well-studied graph…
Word Break is a prototypical factorization problem in string processing: Given a word $w$ of length $N$ and a dictionary $\mathcal{D} = \{d_1, d_2, \ldots, d_{K}\}$ of $K$ strings, determine whether we can partition $w$ into words from…
We investigate the homology representation of the symmetric group on rank-selected subposets of subword order. We show that the homology module for words of bounded length, over an alphabet of size $n,$ decomposes into a sum of tensor…
A large family of words must contain two words that are similar. We investigate several problems where the measure of similarity is the length of a common subsequence. We construct a family of n^{1/3} permutations on n letters, such that…
We introduce a flexible class of well-quasi-orderings (WQOs) on words that generalizes the ordering of (not necessarily contiguous) subwords. Each such WQO induces a class of piecewise testable languages (PTLs) as Boolean combinations of…
A conjecture by Bollob\'as from 1995 (which is a weakenning of the famous Tree Packing Conjecture by Gy\'arf\'as from 1976) states that any set of $k$ trees $T_n,T_{n-1},\dots,T_{n-k+1}$, such that $T_{n-i}$ has $n-i$ vertices, pack into…
An RNA molecule is structured on several layers. The primary and most obvious structure is its sequence of bases, i.e. a word over the alphabet {A,C,G,U}. The higher structure is a set of one-to-one base-pairings resulting in a…
A morphic word is obtained by iterating a morphism to generate an infinite word, and then applying a coding. We characterize morphic words with polynomial growth in terms of a new type of infinite word called a $\textit{zigzag word}$. A…
Let $f_W(n)$ be the number of different factors of length $n$ appearing in $W$. A classical result of Morse and Hedlund, stated in 1938, asserts that an infinite word $W$ is ultimately periodic if and only if $f_W(n)\leq n$ for some $n\in…
Plane increasing trees are rooted labeled trees embedded into the plane such that the sequence of labels is increasing on any branch starting at the root. Relaxed binary trees are a subclass of unlabeled directed acyclic graphs. We…
Let $w$ be a finite word of length $n$. In this paper, we study the maximum possible number of distinct rational power factors in a finite word. A rational power is a word of the form $u=p^kp'$, where $p$ is a nonempty finite word, $k$ is…
A Catalan word of length $n$ that avoids the pattern $(\geq, \geq)$ is a sequence $w=w_1\cdots w_n$ with $w_1=0$ and $0\leq w_i\leq w_{i-1}+1$ for all $i$, while ensuring that no subsequence satisfies $w_i \geq w_{i+1}\geq w_{i+2}$ for…
Fici, Restivo, Silva, and Zamboni define a $k$-antipower to be a word composed of $k$ pairwise distinct, concatenated words of equal length. Berger and Defant conjecture that for any sufficiently well-behaved aperiodic morphic word $w$,…
We introduce the Insertion Chain Complex, a higher-dimensional extension of insertion graphs, as a new framework for analyzing finite sets of words. We study its topological and combinatorial properties, in particular its homology groups,…
Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…