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An RNA sequence is a word over an alphabet on four elements $\{A,C,G,U\}$ called bases. RNA sequences fold into secondary structures where some bases match one another while others remain unpaired. Pseudoknot-free secondary structures can…

Data Structures and Algorithms · Computer Science 2018-03-28 Édouard Bonnet , Paweł Rzążewski , Florian Sikora

A compacted binary tree is a directed acyclic graph encoding a binary tree in which common subtrees are factored and shared, such that they are represented only once. We show that the number of compacted binary trees of size $n$ grows…

Combinatorics · Mathematics 2020-09-04 Andrew Elvey Price , Wenjie Fang , Michael Wallner

Construct recursively a long string of words w1. .. wn, such that at each step k, w k+1 is a new word with a fixed probability p $\in$ (0, 1), and repeats some preceding word with complementary probability 1 -- p. More precisely, given a…

Probability · Mathematics 2019-06-26 Jean Bertoin

Let $\mathbb K$ be a perfect field of characterstic $p\ge 0$ and let $R\in \mathbb K(x)$ be a rational function. This paper studies the number $\Delta_{\alpha, R}(n)$ of distinct solutions of $R^{(n)}(x)=\alpha$ over the algebraic closure…

Number Theory · Mathematics 2020-08-07 José Alves Oliveira , Daniela Oliveira , Lucas Reis

We begin with a new analysis of formal words. Let w be a formal word in letters g_1,...,g_k. The word map associated with w maps the permutations s_1,...,s_k in S_n to the permutation obtained by replacing for each i, every occurrence of…

Combinatorics · Mathematics 2011-04-21 Nati Linial , Doron Puder

For a group G and a positive integer n write B_n(G) = {x \in G : |x^G | \le n}. If s is a positive integer and w is a group word, say that G satisfies the (n,s)-covering condition with respect to the word w if there exists a subset S of G…

Group Theory · Mathematics 2024-01-04 Eloisa Detomi , Marta Morigi , Pavel Shumyatsky

The sequence of partial sums of Fibonacci numbers, beginning with $2$, $4$, $7$, $12$, $20$, $33,\dots$, has several combinatorial interpretations (OEIS A000071). For instance, the $n$-th term in this sequence is the number of length-$n$…

Combinatorics · Mathematics 2025-03-17 Erik Bates , Blan Morrison , Mason Rogers , Arianna Serafini , Anav Sood

We show that the first-order logical theory of the binary overlap-free words (and, more generally, the ${\alpha}$-free words for rational ${\alpha}$, $2 < {\alpha} \leq 7/3$), is decidable. As a consequence, many results previously obtained…

Formal Languages and Automata Theory · Computer Science 2022-09-08 L. Schaeffer , J. Shallit

Given a coprime pair $(m,n)$ of positive integers, rational Catalan numbers $\frac{1}{m+n} \binom{m+n}{m,n}$ counts two combinatorial objects:rational $(m,n)$-Dyck paths are lattice paths in the $m\times n$ rectangle that never go below the…

Combinatorics · Mathematics 2015-04-22 Guoce Xin

Let $w$ be a finite word over the alphabet $\{0,1\}$. For any natural number $n$, let $s_w(n)$ denote the number of occurrence of $w$ in the binary expansion of $n$ as a scattered subsequence. We study the behavior of the partial sum…

Number Theory · Mathematics 2024-11-18 Pranjal Jain , Shuo Li

Distinct letters $x$ and $y$ alternate in a word $w$ if after deleting in $w$ all letters but the copies of $x$ and $y$ we either obtain a word of the form $xyxy\cdots$ (of even or odd length) or a word of the form $yxyx\cdots$ (of even or…

Combinatorics · Mathematics 2019-07-23 Gi-Sang Cheon , Jinha Kim , Minki Kim , Sergey Kitaev

Recently, a new characterization of Lyndon words that are also perfectly clustering was proposed by Lapointe and Reutenauer (2024). A word over a ternary alphabet {a,b,c} is called perfectly clustering Lyndon if and only if it is the…

Combinatorics · Mathematics 2024-06-25 Mélodie Lapointe , Nathan Plourde-Hébert

For an element in $BS(1,n) = \langle t,a | tat^{-1} = a^n \rangle$ written in the normal form $t^{-u}a^vt^w$ with $u,w \geq 0$ and $v \in \mathbb{Z}$, we exhibit a geodesic word representing the element and give a formula for its word…

Group Theory · Mathematics 2020-06-26 Jennifer Taback , Alden Walker

We introduce the notion of a Mahonian pair. Consider the set, P^*, of all words having the positive integers as alphabet. Given finite subsets S,T of P^*, we say that (S,T) is a Mahonian pair if the distribution of the major index, maj,…

Combinatorics · Mathematics 2011-11-03 Bruce E. Sagan , Carla D. Savage

A de Bruijn cycle is a cyclic listing of length A, of a collection of A combinatorial objects, so that each object appears exactly once as a set of consecutive elements in the cycle. In this paper, we show the power of de Bruijn's original…

Combinatorics · Mathematics 2013-04-11 Andre Campbell , Anant Godbole , Bill Kay

We extend the theory of minimal absent words to (rooted and unrooted) trees, having edges labeled by letters from an alphabet $\Sigma$ of cardinality $\sigma$. We show that the set $\text{MAW}(T)$ of minimal absent words of a rooted (resp.…

Data Structures and Algorithms · Computer Science 2019-10-31 Gabriele Fici , Paweł Gawrychowski

We introduce operators $\mathsf{hare}$ and $\mathsf{tortoise}$, which act on words as natural generalizations of West's stack-sorting map. We show that the heuristically slower algorithm $\mathsf{tortoise}$ can sort words arbitrarily faster…

Combinatorics · Mathematics 2018-12-11 Colin Defant , Noah Kravitz

We extract brilliant ideas of Sandi Klavzar, Michel Mollard, and Marko Petkovsek who used them to solve one very specific enumeration problem, namely counting the number of words in the alphabet {0,1} of length n avoiding two consecutive…

Combinatorics · Mathematics 2023-04-25 Shalosh B. Ekhad , Doron Zeilberger

We study a circular order on labelled, m-edge-coloured trees with k vertices, and show that the set of such trees with a fixed circular order is in bijection with the set of RNA m-diagrams of degree k, combinatorial objects which can be…

Combinatorics · Mathematics 2020-12-21 Bethany Marsh , Sibylle Schroll

We describe a combinatorial approach for investigating properties of rational numbers. The overall approach rests on structural bijections between rational numbers and familiar combinatorial objects, namely rooted trees. We emphasize that…

Combinatorics · Mathematics 2012-01-13 Edinah K. Gnang , Chetan Tonde