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We consider the problem of accurately identifying cell boundaries and labeling individual cells in confocal microscopy images, specifically, 3D image stacks of cells with tagged cell membranes. Precise identification of cell boundaries,…

Computer Vision and Pattern Recognition · Computer Science 2019-09-06 Jiaxiang Jiang , Po-Yu Kao , Samuel A. Belteton , Daniel B. Szymanski , B. S. Manjunath

In this letter, we propose a multitask deep learning method for classification of multiple hyperspectral data in a single training. Deep learning models have achieved promising results on hyperspectral image classification, but their…

Computer Vision and Pattern Recognition · Computer Science 2020-12-30 Shengjie Liu , Qian Shi

Medical image segmentation requires not only accuracy but also robustness under challenging imaging conditions. In this study, we show that a carefully configured DeepLabv3 model can achieve high performance in segmenting induced…

Computer Vision and Pattern Recognition · Computer Science 2025-07-30 Maoquan Zhang , Bisser Raytchev , Xiujuan Sun

We report an interpretation method for deep learning models that allows us to handle high-dimensional spectral data in materials science. The proposed method uses feature extraction and clustering analysis to categorize materials into…

Materials Science · Physics 2025-10-21 Akira Takahashi , Yu Kumagai , Arata Takamatsu , Fumiyasu Oba

Reliable cell segmentation and classification from biomedical images is a crucial step for both scientific research and clinical practice. A major challenge for more robust segmentation and classification methods is the large variations in…

Cell Behavior · Quantitative Biology 2017-10-31 Mo Zhang , Xiang Li , Mengjia Xu , Quanzheng Li

This research uses deep learning to estimate the topology of manifolds represented by sparse, unordered point cloud scenes in 3D. A new labelled dataset was synthesised to train neural networks and evaluate their ability to estimate the…

Computer Vision and Pattern Recognition · Computer Science 2023-10-02 Dylan Peek , Matt P. Skerritt , Stephan Chalup

Deep learning models have shown promising performance for cell nucleus segmentation in the field of pathology image analysis. However, training a robust model from multiple domains remains a great challenge for cell nucleus segmentation.…

Image and Video Processing · Electrical Eng. & Systems 2024-03-12 Dawei Fan , Yifan Gao , Jiaming Yu , Yanping Chen , Wencheng Li , Chuancong Lin , Kaibin Li , Changcai Yang , Riqing Chen , Lifang Wei

Tracking of plant cells in images obtained by microscope is a challenging problem due to biological phenomena such as large number of cells, non-uniform growth of different layers of the tightly packed plant cells and cell division.…

Computer Vision and Pattern Recognition · Computer Science 2023-09-22 Md Shazid Islam , Arindam Dutta , Calvin-Khang Ta , Kevin Rodriguez , Christian Michael , Mark Alber , G. Venugopala Reddy , Amit K. Roy-Chowdhury

The ability to automatically detect certain types of cells or cellular subunits in microscopy images is of significant interest to a wide range of biomedical research and clinical practices. Cell detection methods have evolved from…

Computer Vision and Pattern Recognition · Computer Science 2018-02-22 Yao Xue , Nilanjan Ray

Deep learning methods have played a more and more important role in hyperspectral image classification. However, the general deep learning methods mainly take advantage of the information of sample itself or the pairwise information between…

Computer Vision and Pattern Recognition · Computer Science 2021-03-30 Zhiqiang Gong , Weidong Hu , Xiaoyong Du , Ping Zhong , Panhe Hu

Deep convolutional neural networks have shown high efficiency in computer visions and other applications. However, with the increase in the depth of the networks, the computational complexity is growing exponentially. In this paper, we…

Machine Learning · Computer Science 2021-01-08 Ali Mirzaeian , Sai Manoj , Ashkan Vakil , Houman Homayoun , Avesta Sasan

Because hyperspectral remote sensing images contain a lot of redundant information and the data structure is highly non-linear, leading to low classification accuracy of traditional machine learning methods. The latest research shows that…

Computer Vision and Pattern Recognition · Computer Science 2020-05-13 Xiangdong Zhang , Tengjun Wang , Yun Yang

Plant phenotyping refers to a quantitative description of the plants properties, however in image-based phenotyping analysis, our focus is primarily on the plants anatomical, ontogenetical and physiological properties.This technique…

Computer Vision and Pattern Recognition · Computer Science 2022-10-25 Petros N. Tamvakis , Chairi Kiourt , Alexandra D. Solomou , George Ioannakis , Nestoras C. Tsirliganis

In the effort to aid cytologic diagnostics by establishing automatic single cell screening using high throughput digital holographic microscopy for clinical studies thousands of images and millions of cells are captured. The bottleneck lies…

Image and Video Processing · Electrical Eng. & Systems 2024-10-28 Julia Sistermanns , Ellen Emken , Gregor Weirich , Oliver Hayden , Wolfgang Utschick

Deep learning techniques involving image processing and data analysis are constantly evolving. Many domains adapt these techniques for object segmentation, instantiation and classification. Recently, agricultural industries adopted those…

Computer Vision and Pattern Recognition · Computer Science 2019-03-21 Dmitry Kuznichov , Alon Zvirin , Yaron Honen , Ron Kimmel

Feature foundation models - usually vision transformers - offer rich semantic descriptors of images, useful for downstream tasks such as (interactive) segmentation and object detection. For computational efficiency these descriptors are…

Computer Vision and Pattern Recognition · Computer Science 2025-09-01 Ronan Docherty , Antonis Vamvakeros , Samuel J. Cooper

Two ubiquitous aspects of large-scale data analysis are that the data often have heavy-tailed properties and that diffusion-based or spectral-based methods are often used to identify and extract structure of interest. Perhaps surprisingly,…

Machine Learning · Computer Science 2010-05-11 Michael W. Mahoney , Hariharan Narayanan

The present paper develops a general methodology for the morphological segmentation of hyperspectral images, i.e., with an important number of channels. This approach, based on watershed, is composed of a spectral classification to obtain…

Image and Video Processing · Electrical Eng. & Systems 2020-10-05 Guillaume Noyel , Jesus Angulo , Dominique Jeulin

Nowadays, deep learning methods, especially the convolutional neural networks (CNNs), have shown impressive performance on extracting abstract and high-level features from the hyperspectral image. However, general training process of CNNs…

Computer Vision and Pattern Recognition · Computer Science 2020-03-12 Zhiqiang Gong , Ping Zhong , Weidong Hu

Automatic classification of pigmented, non-pigmented, and depigmented non-melanocytic skin lesions have garnered lots of attention in recent years. However, imaging variations in skin texture, lesion shape, depigmentation contrast, lighting…

Computer Vision and Pattern Recognition · Computer Science 2022-09-07 Suraj Mishra , Yizhe Zhang , Li Zhang , Tianyu Zhang , X. Sharon Hu , Danny Z. Chen