Related papers: Synchronization Strings: Explicit Constructions, L…
Insertion-deletion codes (insdel codes for short) are used for correcting synchronization errors in communications, and in other many interesting fields such as DNA storage, date analysis, race-track memory error correction and language…
We consider the problem of efficiently designing sets (codes) of equal-length DNA strings (words) that satisfy certain combinatorial constraints. This problem has numerous motivations including DNA computing and DNA self-assembly. Previous…
We study sketching and streaming algorithms for the Longest Common Subsequence problem (LCS) on strings of small alphabet size $|\Sigma|$. For the problem of deciding whether the LCS of strings $x,y$ has length at least $L$, we obtain a…
In this paper, we present a deterministic variant of Chan's randomized partition tree [Discret. Comput. Geom., 2012]. This result leads to numerous applications. In particular, for $d$-dimensional simplex range counting (for any constant $d…
We present a deterministic algorithm for solving a wide range of dynamic programming problems in trees in $O(\log D)$ rounds in the massively parallel computation model (MPC), with $O(n^\delta)$ words of local memory per machine, for any…
This paper studies \emph{linear} and \emph{affine} error-correcting codes for correcting synchronization errors such as insertions and deletions. We call such codes linear/affine insdel codes. Linear codes that can correct even a single…
Interior point algorithms for solving linear programs have been studied extensively for a long time [e.g. Karmarkar 1984; Lee, Sidford FOCS'14; Cohen, Lee, Song STOC'19]. For linear programs of the form $\min_{Ax=b, x \ge 0} c^\top x$ with…
A Random Access query to a string $T\in [0..\sigma)^n$ asks for the character $T[i]$ at a given position $i\in [0..n)$. In $O(n\log\sigma)$ bits of space, this fundamental task admits constant-time queries. While this is optimal in the…
Deterministic communication is required for applications of several industry verticals including manufacturing, automotive, financial, and health care, etc. These applications rely on reliable and time-synchronized delivery of information…
Important papers have appeared recently on the problem of indexing binary strings for jumbled pattern matching, and further lowering the time bounds in terms of the input size would now be a breakthrough with broad implications. We can…
We revisit a fundamental problem in string matching: given a pattern of length m and a text of length n, both over an alphabet of size $\sigma$, compute the Hamming distance between the pattern and the text at every location. Several…
Group synchronization plays a crucial role in global pipelines for Structure from Motion (SfM). Its formulation is nonconvex and it is faced with highly corrupted measurements. Cycle consistency has been effective in addressing these…
There are efficient dynamic programming solutions to the computation of the Edit Distance from $S\in[1..\sigma]^n$ to $T\in[1..\sigma]^m$, for many natural subsets of edit operations, typically in time within $O(nm)$ in the worst-case over…
Locally Decodable Codes (LDCs) are error correcting codes which permit the recovery of any single message symbol with a low number of queries to the codeword (the locality). Traditional LDC tradeoffs between the rate, locality, and error…
We consider the classic problem of computing the Longest Common Subsequence (LCS) of two strings of length $n$. While a simple quadratic algorithm has been known for the problem for more than 40 years, no faster algorithm has been found…
Given a string $S$ over an alphabet $\Sigma$, the 'string indexing problem' is to preprocess $S$ to subsequently support efficient pattern matching queries, i.e., given a pattern string $P$ report all the occurrences of $P$ in $S$. In this…
We present a new and surprisingly simple analysis of random-shift decompositions -- originally proposed by Miller, Peng, and Xu [SPAA'13]: We show that decompositions for exponentially growing scales $D = 2^0, 2^1, \ldots,…
Unbreakable decomposition, introduced by Cygan et al. (SICOMP'19) and Cygan et al. (TALG'20), has proven to be one of the most powerful tools for parameterized graph cut problems in recent years. Unfortunately, all known constructions…
A run in a string is a maximal periodic substring. For example, the string $\texttt{bananatree}$ contains the runs $\texttt{anana} = (\texttt{an})^{3/2}$ and $\texttt{ee} = \texttt{e}^2$. There are less than $n$ runs in any length-$n$…
We consider the problem of finding, given two documents of total length $n$, a longest string occurring as a substring of both documents. This problem, known as the Longest Common Substring (LCS) problem, has a classic $O(n)$-time solution…