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Deterministic finite automata (DFAs) are constructed for various purposes in computational biology. Little attention, however, has been given to the efficient construction of minimal DFAs. In this article, we define simple non-deterministic…
Grammatical inference consists in learning a formal grammar as a finite state machine or as a set of rewrite rules. In this paper, we are concerned with inferring Nondeterministic Finite Automata (NFA) that must accept some words, and…
In this paper we consider two problems concerning string factorisation. Specifically given a string $w$ and an integer $k$ find a factorisation of $w$ where each factor has length bounded by $k$ and has the minimum (the FmD problem) or the…
The single shortest path algorithm is undefined for weighted finite-state automata over non-idempotent semirings because such semirings do not guarantee the existence of a shortest path. However, in non-idempotent semirings admitting an…
In the computational-mechanics structural analysis of one-dimensional cellular automata the following automata-theoretic analogue of the \emph{change-point problem} from time series analysis arises: \emph{Given a string $\sigma$ and a…
The state complexity of a Deterministic Finite-state automaton (DFA) is the number of states in its minimal equivalent DFA. We study the state complexity of random $n$-state DFAs over a $k$-symbol alphabet, drawn uniformly from the set…
In the present work, we lay out a new theory showing that all automata can always be co-lexicographically partially ordered, and an intrinsic measure of their complexity can be defined and effectively determined, namely, the minimum width…
The problem DFA-Intersection-Nonemptiness asks if a given number of deterministic automata accept a common word. In general, this problem is PSPACE-complete. Here, we investigate this problem for the subclasses of commutative automata and…
Finite state automata (FSA) are ubiquitous in computer science. Two of the most important algorithms for FSA processing are the conversion of a non-deterministic finite automaton (NFA) to a deterministic finite automaton (DFA), and then the…
A word w is called synchronizing (recurrent, reset, directed) word of a deterministic finite automaton (DFA) if w sends all states of the automaton on a unique state. Jan Cerny had found in 1964 a sequence of n-state complete DFA with…
We study the fundamental problem of finding the best string to represent a given set, in the form of the Closest String problem: Given a set $X \subseteq \Sigma^d$ of $n$ strings, find the string $x^*$ minimizing the radius of the smallest…
We revisit classic string problems considered in the area of parameterized complexity, and study them through the lens of dynamic data structures. That is, instead of asking for a static algorithm that solves the given instance efficiently,…
We present an on-the-fly synthesis framework for Linear Temporal Logic over finite traces (LTLf) based on top-down deterministic automata construction. Existing approaches rely on constructing a complete Deterministic Finite Automaton (DFA)…
A synchronizing word of a deterministic finite complete automaton is a word whose action maps every state to a single one. Finding a shortest or a short synchronizing word is a central computational problem in the theory of synchronizing…
The identification of a deterministic finite automaton (DFA) from labeled examples is a well-studied problem in the literature; however, prior work focuses on the identification of monolithic DFAs. Although monolithic DFAs provide accurate…
A classical problem in grammatical inference is to identify a deterministic finite automaton (DFA) from a set of positive and negative examples. In this paper, we address the related - yet seemingly novel - problem of identifying a set of…
Data compression plays a crucial part in the cloud based systems of today. One the fundaments of compression is quasi-periodicity, for which there are several models. We build upon the most popular quasi-periodicity model for strings, i.e.,…
Strings are a natural representation of biological data such as DNA, RNA and protein sequences. The problem of finding a string that summarizes a set of sequences has direct application in relative compression algorithms for genome and…
We approach the task of computing a carefully synchronizing word of minimum length for a given partial deterministic automaton, encoding the problem as an instance of SAT and invoking a SAT solver. Our experimental results demonstrate that…
We approach the problem of computing a $D_{3}$-synchronizing word of minimum length for a given nondeterministic automaton via its encoding as an instance of SAT and invoking a SAT solver. We also present some experimental results.