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RNA-Seq technology offers new high-throughput ways for transcript identification and quantification based on short reads, and has recently attracted great interest. The problem is usually modeled by a weighted splicing graph whose nodes…

Quantitative Methods · Quantitative Biology 2013-08-02 Alexandru I. Tomescu , Anna Kuosmanen , Romeo Rizzi , Veli Mäkinen

We consider a cops and robber game where the cops are blocking edges of a graph, while the robber occupies its vertices. At each round of the game, the cops choose some set of edges to block and right after the robber is obliged to move to…

Discrete Mathematics · Computer Science 2020-09-09 Stratis Limnios , Christophe Paul , Joanny Perret , Dimitrios M. Thilikos

Scheinerman and Wilf (1994) assert that `an important open problem in the study of graph embeddings is to determine the rectilinear crossing number of the complete graph K_n.' A rectilinear drawing of K_n is an arrangement of n vertices in…

Discrete Mathematics · Computer Science 2011-10-04 Alex Brodsky , Stephane Durocher , Ellen Gethner

We use a randomised embedding method to prove that for all \alpha>0 any sufficiently large oriented graph G with minimum in-degree and out-degree \delta^+(G),\delta^-(G)\geq (3/8+\alpha)|G| contains every possible orientation of a Hamilton…

Combinatorics · Mathematics 2009-08-06 Luke Kelly

Dumas, Foucaud, Perez, and Todinca [SIAM J. Disc. Math., 2024] proved that if the vertex set of a graph $G$ can be covered by $k$ shortest paths, then the pathwidth of $G$ is bounded by $\mathcal{O}(k \cdot 3^k)$. We prove a coarse variant…

Combinatorics · Mathematics 2025-03-05 Meike Hatzel , Michał Pilipczuk

We introduce a new bilevel version of the classic shortest path problem and completely characterize its computational complexity with respect to several problem variants. In our problem, the leader and the follower each control a subset of…

Data Structures and Algorithms · Computer Science 2026-02-19 Dorothee Henke , Lasse Wulf

Given an undirected graph, $G$, and vertices, $s$ and $t$ in $G$, the tracking paths problem is that of finding the smallest subset of vertices in $G$ whose intersection with any $s$-$t$ path results in a unique sequence. This problem is…

Data Structures and Algorithms · Computer Science 2021-04-27 Michael T. Goodrich , Siddharth Gupta , Hadi Khodabandeh , Pedro Matias

In an $\mathsf{L}$-embedding of a graph, each vertex is represented by an $\mathsf{L}$-segment, and two segments intersect each other if and only if the corresponding vertices are adjacent in the graph. If the corner of each…

Computational Geometry · Computer Science 2017-03-07 Abu Reyan Ahmed , Felice De Luca , Sabin Devkota , Alon Efrat , Md Iqbal Hossain , Stephen Kobourov , Jixian Li , Sammi Abida Salma , Eric Welch

A monitoring edge-geodetic set of a graph is a subset $M$ of its vertices such that for every edge $e$ in the graph, deleting $e$ increases the distance between at least one pair of vertices in $M$. We study the following computational…

Computational Complexity · Computer Science 2025-05-27 Florent Foucaud , Clara Marcille , R. B. Sandeep , Sagnik Sen , S Taruni

We study a map matching problem, the task of finding in an embedded graph a path that has low distance to a given curve in R^2. The Fr\'echet distance is a common measure for this problem. Efficient methods exist to compute the best path…

Computational Geometry · Computer Science 2013-06-13 Wouter Meulemans

We study two popular ways to sketch the shortest path distances of an input graph. The first is distance preservers, which are sparse subgraphs that agree with the distances of the original graph on a given set of demand pairs. Prior work…

Data Structures and Algorithms · Computer Science 2021-08-17 Greg Bodwin , Virginia Vassilevska Williams

We consider the worst-case query complexity of some variants of certain \cl{PPAD}-complete search problems. Suppose we are given a graph $G$ and a vertex $s \in V(G)$. We denote the directed graph obtained from $G$ by directing all edges in…

Combinatorics · Mathematics 2017-07-28 Dániel Gerbner , Balázs Keszegh , Dömötör Pálvölgyi , Günter Rote , Gábor Wiener

We prove that every graph $G$ on $n$ vertices with no isolated vertices contains an induced subgraph of size at least $n/10000$ with all degrees odd. This solves an old and well-known conjecture in graph theory.

Combinatorics · Mathematics 2021-04-02 Asaf Ferber , Michael Krivelevich

The vertex connectivity of a graph $G$ is the size of the smallest set of vertices $S$ such that $G \setminus S$ is disconnected. For the class of planar graphs, the problem of vertex connectivity is well-studied, both from structural and…

Computational Geometry · Computer Science 2025-06-03 Therese Biedl , Karthik Murali

In this paper we introduce the edge inducibility problem. This is a common refinement of both the well known Kruskal--Katona theorem and the inducibility question introduced by Pippenger and Golumbic. Our first result is a hardness result.…

Combinatorics · Mathematics 2025-09-30 Ting-Wei Chao , Asaf Cohen Antonir , Anqi Li , Hung-Hsun Hans Yu

Graph embedding maps graph nodes to low-dimensional vectors, and is widely adopted in machine learning tasks. The increasing availability of billion-edge graphs underscores the importance of learning efficient and effective embeddings on…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-02-27 Peng Fang , Arijit Khan , Siqiang Luo , Fang Wang , Dan Feng , Zhenli Li , Wei Yin , Yuchao Cao

In 2003, Bohman, Frieze, and Martin initiated the study of randomly perturbed graphs and digraphs. For digraphs, they showed that for every $\alpha>0$, there exists a constant $C$ such that for every $n$-vertex digraph of minimum…

Combinatorics · Mathematics 2023-10-16 Igor Araujo , József Balogh , Robert A. Krueger , Simón Piga , Andrew Treglown

This paper studies the problem of proper-walk connection number: given an undirected connected graph, our aim is to colour its edges with as few colours as possible so that there exists a properly coloured walk between every pair of…

Discrete Mathematics · Computer Science 2020-09-11 Jørgen Bang-Jensen , Thomas Bellitto , Anders Yeo

We give an algorithm that takes a directed graph $G$ undergoing $m$ edge insertions with lengths in $[1, W]$, and maintains $(1+\epsilon)$-approximate shortest path distances from a fixed source $s$ to all other vertices. The algorithm is…

Data Structures and Algorithms · Computer Science 2025-06-25 Yang P. Liu

A recent result of Chepoi, Estellon and Vaxes [DCG '07] states that any planar graph of diameter at most 2R can be covered by a constant number of balls of size R; put another way, there are a constant-sized subset of vertices within which…

Computational Geometry · Computer Science 2014-04-01 Glencora Borradaile , Erin Wolf Chambers
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