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Convolutional neural networks (CNN) for medical imaging are constrained by the number of annotated data required in the training stage. Usually, manual annotation is considered to be the "gold standard". However, medical imaging datasets…

Computer Vision and Pattern Recognition · Computer Science 2018-04-16 Oeslle Lucena , Roberto Souza , Leticia Rittner , Richard Frayne , Roberto Lotufo

Skull-stripping methods aim to remove the non-brain tissue from acquisition of brain scans in magnetic resonance (MR) imaging. Although several methods sharing this common purpose have been presented in literature, they all suffer from the…

Computer Vision and Pattern Recognition · Computer Science 2018-10-26 Gabriele Valvano , Nicola Martini , Andrea Leo , Gianmarco Santini , Daniele Della Latta , Emiliano Ricciardi , Dante Chiappino

Semantic segmentation using convolutional neural networks (CNN) is a crucial component in image analysis. Training a CNN to perform semantic segmentation requires a large amount of labeled data, where the production of such labeled data is…

Computer Vision and Pattern Recognition · Computer Science 2021-01-26 Ying Chen , Xu Ouyang , Kaiyue Zhu , Gady Agam

Skull stripping magnetic resonance images (MRI) of the human brain is an important process in many image processing techniques, such as automatic segmentation of brain structures. Numerous methods have been developed to perform this task,…

Image and Video Processing · Electrical Eng. & Systems 2026-04-16 Hjalti Thrastarson , Lotta M. Ellingsen

Yes, it can. Data augmentation is perhaps the oldest preprocessing step in computer vision literature. Almost every computer vision model trained on imaging data uses some form of augmentation. In this paper, we use the inter-vertebral disk…

Computer Vision and Pattern Recognition · Computer Science 2019-09-10 Bilwaj Gaonkar , Matthew Edwards , Alex Bui , Matthew Brown , Luke Macyszyn

Deep learning methods are used on spectroscopic data to predict drug content in tablets from near infrared (NIR) spectra. Using convolutional neural networks (CNNs), features are ex- tracted from the spectroscopic data. Extended…

Machine Learning · Computer Science 2017-10-06 Esben Jannik Bjerrum , Mads Glahder , Thomas Skov

Deep convolutional neural networks (CNNs) are state-of-the-art for semantic image segmentation, but typically require many labeled training samples. Obtaining 3D segmentations of medical images for supervised training is difficult and labor…

Computer Vision and Pattern Recognition · Computer Science 2019-07-29 Zhenlin Xu , Marc Niethammer

Due to the limitation of available labeled data, medical image segmentation is a challenging task for deep learning. Traditional data augmentation techniques have been shown to improve segmentation network performances by optimizing the…

Image and Video Processing · Electrical Eng. & Systems 2022-11-03 Kevin Ginsburger

Brain extraction (skull stripping) is a challenging problem in neuroimaging. It is due to the variability in conditions from data acquisition or abnormalities in images, making brain morphology and intensity characteristics changeable and…

Computer Vision and Pattern Recognition · Computer Science 2022-01-31 Duy H. M. Nguyen , Duy M. Nguyen , Mai T. N. Truong , Thu Nguyen , Khanh T. Tran , Nguyen A. Triet , Pham T. Bao , Binh T. Nguyen

Whole brain extraction, also known as skull stripping, is a process in neuroimaging in which non-brain tissue such as skull, eyeballs, skin, etc. are removed from neuroimages. Skull striping is a preliminary step in presurgical planning,…

Image and Video Processing · Electrical Eng. & Systems 2020-06-05 Sara Ranjbar , Kyle W. Singleton , Lee Curtin , Cassandra R. Rickertsen , Lisa E. Paulson , Leland S. Hu , J. Ross Mitchell , Kristin R. Swanson

Segmenting a structural magnetic resonance imaging (MRI) scan is an important pre-processing step for analytic procedures and subsequent inferences about longitudinal tissue changes. Manual segmentation defines the current gold standard in…

Computer Vision and Pattern Recognition · Computer Science 2017-06-07 Alex Fedorov , Jeremy Johnson , Eswar Damaraju , Alexei Ozerin , Vince Calhoun , Sergey Plis

Image segmentation is an important task in many medical applications. Methods based on convolutional neural networks attain state-of-the-art accuracy; however, they typically rely on supervised training with large labeled datasets. Labeling…

Computer Vision and Pattern Recognition · Computer Science 2019-04-09 Amy Zhao , Guha Balakrishnan , Frédo Durand , John V. Guttag , Adrian V. Dalca

The removal of non-brain signal from magnetic resonance imaging (MRI) data, known as skull-stripping, is an integral component of many neuroimage analysis streams. Despite their abundance, popular classical skull-stripping methods are…

Image and Video Processing · Electrical Eng. & Systems 2022-07-27 Andrew Hoopes , Jocelyn S. Mora , Adrian V. Dalca , Bruce Fischl , Malte Hoffmann

Automatic brain tumor segmentation from Magnetic Resonance Imaging (MRI) data plays an important role in assessing tumor response to therapy and personalized treatment stratification.Manual segmentation is tedious and…

Image and Video Processing · Electrical Eng. & Systems 2021-11-29 Hadas Ben-Atya , Ori Rajchert , Liran Goshen , Moti Freiman

Medical Image Segmentation is a useful application for medical image analysis including detecting diseases and abnormalities in imaging modalities such as MRI, CT etc. Deep learning has proven to be promising for this task but usually has a…

Image and Video Processing · Electrical Eng. & Systems 2023-02-08 Soham Bhosale , Arjun Krishna , Ge Wang , Klaus Mueller

Convolutional Neural Networks (CNNs) serve as the workhorse of deep learning, finding applications in various fields that rely on images. Given sufficient data, they exhibit the capacity to learn a wide range of concepts across diverse…

Computer Vision and Pattern Recognition · Computer Science 2025-02-27 Saorj Kumar , Prince Asiamah , Oluwatoyin Jolaoso , Ugochukwu Esiowu

Convolutional neural networks (CNNs) have shown promising results on several segmentation tasks in magnetic resonance (MR) images. However, the accuracy of CNNs may degrade severely when segmenting images acquired with different scanners…

Machine Learning · Statistics 2018-05-28 Neerav Karani , Krishna Chaitanya , Christian Baumgartner , Ender Konukoglu

The limited availability of labeled brain network data makes it challenging to achieve accurate and interpretable psychiatric diagnoses. While self-supervised learning (SSL) offers a promising solution, existing methods often rely on…

Machine Learning · Computer Science 2025-09-25 Mujie Liu , Chenze Wang , Liping Chen , Nguyen Linh Dan Le , Niharika Tewari , Ting Dang , Jiangang Ma , Feng Xia

The application of Deep Learning (DL) for medical diagnosis is often hampered by two problems. First, the amount of training data may be scarce, as it is limited by the number of patients who have acquired the condition to be diagnosed.…

Computer Vision and Pattern Recognition · Computer Science 2020-07-17 Diyuan Lu , Nenad Polomac , Iskra Gacheva , Elke Hattingen , Jochen Triesch

Many successful methods developed for medical image analysis that are based on machine learning use supervised learning approaches, which often require large datasets annotated by experts to achieve high accuracy. However, medical data…

Computer Vision and Pattern Recognition · Computer Science 2022-07-25 Banafshe Felfeliyan , Abhilash Hareendranathan , Gregor Kuntze , David Cornell , Nils D. Forkert , Jacob L. Jaremko , Janet L. Ronsky
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