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The scaling behaviour of the zero shear rate viscosity of semidilute unentangled DNA solutions, in the double crossover regime driven by temperature and concentration, is mapped out by systematic experiments. The viscosity is shown to have…

Soft Condensed Matter · Physics 2020-07-03 Sharadwata Pan , Duc At Nguyen , T. Sridhar , P. Sunthar , J. Ravi Prakash

The extensional rheology of polymeric liquids has been extensively examined through experiments and theoretical predictions. However, a systematic study of the extensional rheology of polymer solutions in the semidilute regime, in terms of…

Soft Condensed Matter · Physics 2020-07-03 Sharadwata Pan , Duc At Nguyen , P. Sunthar , T. Sridhar , J. Ravi Prakash

The dynamic behavior of semi-dilute polymer solutions is governed by an interplay between solvent quality, concentration, molecular weight, and flow type. Semi-dilute solutions are characterized by large fluctuations in concentration,…

Soft Condensed Matter · Physics 2020-07-03 Kai-Wen Hsiao , Chandi Samsal , J. Ravi Prakash , Charles M. Schroeder

The properties of semidilute polymer solutions are investigated at equilibrium and under shear flow by mesoscale simulations, which combine molecular dynamics simulations and the multiparticle collision dynamics approach. In semidilute…

Soft Condensed Matter · Physics 2015-03-19 Chien-Cheng Huang , Roland G. Winkler , Godehard Sutmann , Gerhard Gompper

The tumbling dynamics of individual polymers in semidilute solution is studied by large-scale non-equilibrium mesoscale hydrodynamic simulations. We find that the tumbling time is equal to the non-equilibrium relaxation time of the polymer…

Soft Condensed Matter · Physics 2011-03-21 C. -C. Huang , G. Sutmann , G. Gompper , R. G. Winkler

Using high-resolution confocal rheometry, we study the shear profiles of well-entangled DNA solutions under large amplitude oscillatory shear (LAOS) in a rectilinear planar shear cell. With increasing Weissenberg number (Wi), we observe…

Soft Condensed Matter · Physics 2018-01-17 Seunghwan Shin , Kevin D. Dorfman , Xiang Cheng

The results of Brownian dynamics simulations of a single DNA molecule in shear flow are presented taking into account the effect of internal viscosity. The dissipative mechanism of internal viscosity is proved necessary in the research of…

Biomolecules · Quantitative Biology 2010-04-14 Jack Yang , Roderick V. N. Melnik

The swelling of the viscosity radius, $\alpha_\eta$, and the universal viscosity ratio, $U_{\eta R}$, have been determined experimentally for linear DNA molecules in dilute solutions with excess salt, and numerically by Brownian dynamics…

Soft Condensed Matter · Physics 2020-07-03 Sharadwata Pan , D. Ahirwal , Duc At Nguyen , T. Sridhar , P. Sunthar , J. Ravi Prakash

We study the dynamics of a double-stranded DNA (dsDNA) segment, as a semiflexible polymer, in a shear flow, the strength of which is customarily expressed in terms of the dimensionless Weissenberg number Wi. Polymer chains in shear flows…

Soft Condensed Matter · Physics 2016-04-08 Debabrata Panja , Gerard T. Barkema , J. M. J. van Leeuwen

Concentration regimes in polymer and polyelectrolyte solutions can be identified by scaling laws for the relation between specific zero-shear viscosity and concentration. Recently, we have shown that the same is true for the infinite-shear…

We study the rheology of a two-fluid emulsion in semi-concentrated conditions; the solute is Newtonian while the solvent an inelastic power law fluid. The problem at hand is tackled by means of direct numerical simulations using the volume…

Fluid Dynamics · Physics 2021-09-01 Marco Edoardo Rosti , Shu Takagi

The shear viscosity of a Lennard-Jones fluid is obtained by stochastic dissipative molecular dynamics (SDMD) simulations. A generic constraint to the equations of motion is given that reduces the sensitivity of the shear viscosity to the…

Statistical Mechanics · Physics 2018-10-31 Phil Attard

The dynamics of individual DNA molecules in semidilute solutions undergoing planar extensional flow is simulated using a multi-particle Brownian dynamics algorithm, which incorporates hydrodynamic and excluded volume interactions in the…

Soft Condensed Matter · Physics 2020-07-03 Chandi Sasmal , Kai-Wen Hsiao , Charles M. Schroeder , J. Ravi Prakash

The results of modeling shear flows in classical two-dimensional dipole systems are presented. We used the method of non-equilibrium molecular dynamics to calculate the viscosity at various shear rates. The coefficients of shear viscosity…

Plasma Physics · Physics 2023-01-04 N. E. Djienbekov , A. M. Bekbussyn , N. Kh. Bastykova , T. S. Ramazanov , S. K. Kodanova

Edge instabilities are believed to be one of the possible causes of shear banding in entangled polymeric fluids. Here, we investigate the effect of edge disturbance on the shear-induced dynamics of well-entangled DNA solutions. Using a…

Soft Condensed Matter · Physics 2018-10-17 Seunghwan Shin , Kevin D. Dorfman , Xiang Cheng

The linear viscoelastic response of flexible polymer solutions in the dilute and semidilute unentangled regimes is investigated using Brownian dynamics simulations. The relaxation modulus and dynamic moduli are computed over a wide range of…

Soft Condensed Matter · Physics 2026-04-08 Amit Varakhedkar , P. Sunthar , J. Ravi Prakash

Complex fluids containing low concentrations of slender colloidal rods can display a high viscosity, while little flow is needed to thin the fluid. This feature makes slender rods essential constituents in industrial applications and…

The shear viscosity in the dilute regime of a model for confined granular matter is studied by simulations and kinetic theory. The model consists on projecting into two dimensions the motion of vibrofluidized granular matter in shallow…

Statistical Mechanics · Physics 2015-06-22 Rodrigo Soto , Dino Risso , Ricardo Brito

The damping effect to the DNA bubble is investigated within the Peyrard-Bishop model. In the continuum limit, the dynamics of the bubble of DNA is described by the damped nonlinear Schrodinger equation and studied by means of variational…

Biomolecules · Quantitative Biology 2012-06-25 A. Sulaiman , F. P. Zen , H. Alatas , L. T. Handoko

We discuss the shear viscosity of a Newtonian solution of catalytic enzymes and substrate molecules. The enzyme is modeled as a two-state dimer consisting of two spherical domains connected with an elastic spring. The enzymatic…

Soft Condensed Matter · Physics 2020-01-30 Yuto Hosaka , Shigeyuki Komura , David Andelman
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