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When mutation rates are low, natural selection remains effective, and increasing the mutation rate can give rise to an increase in adaptation rate. When mutation rates are high to begin with, however, increasing the mutation rate may have a…

Populations and Evolution · Quantitative Biology 2012-11-06 Philip Gerrish , Alexandre Colato , Paul Sniegowski

Configurational arrangement of network architecture and interaction character of individuals are two most influential factors on the mechanisms underlying the evolutionary outcome of cooperation, which is explained by the well-established…

Populations and Evolution · Quantitative Biology 2018-02-16 Bijan Sarkar

Robustness, the insensitivity of some of a biological system's functionalities to a set of distinct conditions, is intimately linked to fitness. Recent studies suggest that it may also play a vital role in enabling the evolution of species.…

Adaptation and Self-Organizing Systems · Physics 2011-12-15 James M Whitacre , Axel Bender

In contrast to the neutral population cycles of the deterministic mean-field Lotka--Volterra rate equations, including spatial structure and stochastic noise in models for predator-prey interactions yields complex spatio-temporal structures…

Populations and Evolution · Quantitative Biology 2013-10-16 Ulrich Dobramysl , Uwe C. Tauber

Understanding the evolutionary stability of cooperation is a central problem in biology, sociology, and economics. There exist only a few known mechanisms that guarantee the existence of cooperation and its robustness to cheating. Here, we…

Populations and Evolution · Quantitative Biology 2024-11-20 Lorenzo Fant , Onofrio Mazzarisi , Emanuele Panizon , Jacopo Grilli

The environment in which a population evolves can have a crucial impact on selection. We study evolutionary dynamics in finite populations of fixed size in a changing environment. The population dynamics are driven by birth and death…

Populations and Evolution · Quantitative Biology 2014-09-01 Peter Ashcroft , Philipp M Altrock , Tobias Galla

Many complex adaptive systems contain a large diversity of specialized components. The specialization at the level of the microscopic degrees of freedom, and diversity at the level of the system as a whole are phenomena that appear during…

adap-org · Physics 2007-05-23 Vivek S. Borkar , Sanjay Jain , Govindan Rangarajan

Adaptation to changing environments is a hallmark of biological systems. Diversity in traits is necessary for adaptation and can influence the survival of a population faced with novelty. In habitats that remain stable over many…

Adaptation and Self-Organizing Systems · Physics 2011-12-15 James M. Whitacre , Sergei P. Atamas

Introducing environmental feedback into evolutionary game theory has led to the development of eco-evolutionary games, which have gained popularity due to their ability to capture the intricate interplay between the environment and…

Biological Physics · Physics 2023-08-08 Changyan Di , Qingguo Zhou , Jun Shen , Jinqiang Wang , Rui Zhou , Tianyi Wang

Combining a spatiotemporal, multi-agent based model of a foraging ecosystem with linear, genetically programmed rules for the agents' behaviors results in implicit, endogenous, objective functions and selection algorithms based on "natural…

Neural and Evolutionary Computing · Computer Science 2023-06-01 John C Stevenson

We analyse the complexity of environments according to the policies that need to be used to achieve high performance. The performance results for a population of policies leads to a distribution that is examined in terms of policy…

Artificial Intelligence · Computer Science 2013-02-11 Jose Hernandez-Orallo

We propose a model for the evolutionary ecology of words as one attempt to extend evolutionary game theory and agent-based models by utilizing the rich linguistic expressions of Large Language Models (LLMs). Our model enables the emergence…

Populations and Evolution · Quantitative Biology 2025-05-12 Reiji Suzuki , Takaya Arita

Environmental variability often has substantial impacts on natural populations and communities through its effects on the performance of individuals. Because organisms' responses to environmental conditions are often nonlinear (e.g.,…

Methodology · Statistics 2020-11-30 Zi Ye , Giles Hooker , Stephen P. Ellner

In the evolutionary minority game, agents are allowed to evolve their strategies (``mutate'') based on past experience. We explore the dependence of the system's global behavior on the response time and the mutation threshold of the agents.…

Statistical Mechanics · Physics 2009-11-10 Shahar Hod , Ehud Nakar

Beneficial reversals of dominance reduce the costs of genetic trade-offs and can enable selection to maintain genetic variation for fitness. Beneficial dominance reversals are characterized by the beneficial allele for a given context (e.g.…

Populations and Evolution · Quantitative Biology 2024-03-28 Karl Grieshop , Eddie K. H. Ho , Katja R. Kasimatis

Cooperation is central to the organization of complex biological and social systems. Most theoretical models assume homogeneous environments; in reality, populations inhabit spatially varying landscapes in which the payoffs of cooperation…

Populations and Evolution · Quantitative Biology 2026-04-15 Amir Kargaran , Kamran Kaveh , Krishnendu Chatterjee

Referential games offer a grounded learning environment for neural agents which accounts for the fact that language is functionally used to communicate. However, they do not take into account a second constraint considered to be fundamental…

Computation and Language · Computer Science 2021-02-02 Gautier Dagan , Dieuwke Hupkes , Elia Bruni

Innovation and evolution are two processes of paramount relevance for social and biological systems. In general, the former allows to introduce elements of novelty, while the latter is responsible for the motion of a system in its phase…

Physics and Society · Physics 2018-04-11 Marco Antonio Amaral , Marco Alberto Javarone

Designing soft robots poses considerable challenges: automated design approaches may be particularly appealing in this field, as they promise to optimize complex multi-material machines with very little or no human intervention.…

Artificial Intelligence · Computer Science 2017-11-20 Francesco Corucci , Nick Cheney , Francesco Giorgio-Serchi , Josh Bongard , Cecilia Laschi

Persistent language-model agents increasingly combine tool use, tiered memory, reflective prompting, and runtime adaptation. In such systems, behavior is shaped not only by current prompts but by mutable internal conditions that influence…

Artificial Intelligence · Computer Science 2026-05-13 Krti Tallam