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To characterize the thermodynamical equilibrium of DNA chains interacting with a solution of non-specific binding proteins, a Flory-Huggins free energy model was implemented. We explored the dependence on DNA and protein concentrations of…

Soft Condensed Matter · Physics 2015-11-04 Guillaume Le Treut , François Képès , Henri Orland

We use Monte Carlo simulations and free-energy techniques to show that binary solutions of penta- and hexavalent two-dimensional patchy particles can form thermodynamically stable quasicrystals even at very narrow patch widths, provided…

Soft Condensed Matter · Physics 2016-11-11 Aleks Reinhardt , John S. Schreck , Flavio Romano , Jonathan P. K. Doye

From a nanoscience perspective, cellular processes and their reduced in vitro imitations provide extraordinary examples for highly robust few or single molecule reaction pathways. A prime example are biochemical reactions involving DNA…

Biological Physics · Physics 2007-05-23 Ralf Metzler , Tobias Ambjoernsson , Andreas Hanke , Yongli Zhang , Stephen Levene

Optical tweezers are employed to measure the forces of interaction within a single pair of DNA-grafted colloids in dependence of the molecular weight of the DNA-chains, and the concentration and valence of the surrounding ionic medium. The…

Recent research on silver nanowires prepared on DNA templates has focused on two fundamental applications: nano-scale circuits and sensors. Despite its broad potential, the formation kinetics of DNA-templated silver nanowires remains…

It is well known that the structural deformations (stressed states) of DNA molecule play a crucial role in its biological functions including gene expression. For instance, looping in DNA (often mediated by protein binding) is a crucial…

Biological Physics · Physics 2007-05-23 Sachin Goyal , Noel C. Perkins

By varying the oil volume fraction, the microscopic droplet size and the macroscopic rheology of emulsions are investigated in a Taylor-Couette (TC) turbulent shear flow. Although here oil and water in the emulsions have almost the same…

Fluid Dynamics · Physics 2022-11-23 Lei Yi , Cheng Wang , Thomas van Vuren , Detlef Lohse , Frederic Risso , Federico Toschi , Chao Sun

Electrowetting on dielectric (EWOD) has emerged as a powerful tool to electrically manipulate tiny individual droplets in a controlled manner. Despite tremendous progress over the past two decades, current EWOD operating in ambient…

Materials Science · Physics 2014-09-25 Chonglei Hao , Yahua Liu , Xuemei Chen , Yuncheng He , Qiusheng Li , K. Y. Li , Zuankai Wang

The morphology of DNA is strongly influenced by its surrounding environment, including factors such as pH, salt type and valency, and the presence of polymers. Inorganic salts are known to reduce the DNA chain length through mechanisms like…

Soft Condensed Matter · Physics 2026-03-03 Anuj Chhabra , Sandip Mandal , Yugang Zhang , Oleg Gang , Prabal K. Maiti , Sunita Srivastava

We study water-in-oil emulsion droplets, running the Belousov-Zhabotinsky reaction, that form a new type of active matter unit. These droplets, stabilised by surfactants dispersed in the oil medium, are capable of internal chemical…

Soft Condensed Matter · Physics 2012-06-14 Shashi Thutupalli , Stephan Herminghaus

Structural colours have drawn wide attention for their potential as a future printing technology for various applications, ranging from biomimetic tissues to adaptive camouflage materials. However, an efficient approach to realise robust…

The twisting deformation of mechanically stretched DNA molecules is studied by a coarse grained Hamiltonian model incorporating the fundamental interactions that stabilize the double helix and accounting for the radial and angular base pair…

Soft Condensed Matter · Physics 2017-12-15 Marco Zoli

DNA nanostructures are made using synthetic DNA strands, the sequences of which are designed such that they will self-assemble into the desired form by hybridization of complementary domains. Various structures and devices have been…

Biological Physics · Physics 2015-06-02 Katherine E. Dunn

We propose a model that can account for the experimentally observed phase behavior of DNA-nanoparticle assemblies (R. Jin et al., JACS 125, 1643 (2003); T. A. Taton et al., Science 289, 1757 (2000)). The binding of DNA-coated nano-particles…

Soft Condensed Matter · Physics 2007-05-23 D. B. Lukatsky , Daan Frenkel

There are two approaches to describing DNA-ions interactions. The physical approach is an analysis of electrostatic interactions between ions and charges on the DNA molecule. The coordination chemistry approach is a search for modes of…

Biomolecules · Quantitative Biology 2025-10-29 Elena A. Zubova , Ivan A. Strelnikov

This fluid dynamics video showcases how optically induced electrowetting can be used to manipulate liquid droplets in open space and particulate phases inside the droplet. A photoconductive layer is added to a conventional…

Fluid Dynamics · Physics 2009-10-20 Han-Sheng Chuang , Aloke Kumar , Steven T. Wereley

Grafting linkers with open ends of complementary single-stranded DNA makes a flexible tool to tune interactions between colloids,which facilitates the design of complex self-assembly structures. Recently, it has been proposed to coat…

Soft Condensed Matter · Physics 2018-01-31 Hao Hu , Pablo Sampedro Ruiz , Ran Ni

Genetic engineering of cells has a range of applications in treating incurable diseases. Plasmid DNA is a popular choice of nucleic acid for cell engineering due to its low cost and stability. However, plasmid DNA must survive the…

Biological Physics · Physics 2025-10-06 Leyla Akh , Apresio K. Fajrial , Benjamin Seelbinder , Xin Xu , Wei Tan , Jill Slansky , Corey P. Neu , Xiaoyun Ding

Droplet-based communications has been investigated as a more robust alternative to diffusion-based molecular communications (MC), yet most existing demonstrations employ large "plug-like" droplets or simple T-junction designs for droplet…

Emerging Technologies · Computer Science 2025-02-10 Eren Akyol , Aysa Azmoudeh , Iman Mokari Bolhassan , Pelin Kubra Isgor , Murat Kuscu

Bending of DNA from a straight rod to a circular form in presence of any of the mono-, di-, tri- or tetravalent counterions has been simulated in strong Coulomb coupling environment employing a previously developed energy minimization…

Biological Physics · Physics 2015-05-28 Arup K. Mukherjee
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