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Automatic organ segmentation is an important prerequisite for many computer-aided diagnosis systems. The high anatomical variability of organs in the abdomen, such as the pancreas, prevents many segmentation methods from achieving high…

Computer Vision and Pattern Recognition · Computer Science 2015-09-17 Holger R. Roth , Amal Farag , Le Lu , Evrim B. Turkbey , Ronald M. Summers

Unlike existing fully-supervised approaches, we rethink colorectal polyp segmentation from an out-of-distribution perspective with a simple but effective self-supervised learning approach. We leverage the ability of masked autoencoders --…

Image and Video Processing · Electrical Eng. & Systems 2024-03-22 Ge-Peng Ji , Jing Zhang , Dylan Campbell , Huan Xiong , Nick Barnes

Colorectal cancer (CRC) is the second leading cause of cancer-related death worldwide. Excision of polyps during colonoscopy helps reduce mortality and morbidity for CRC. Powered by deep learning, computer-aided diagnosis (CAD) systems can…

Image and Video Processing · Electrical Eng. & Systems 2022-10-26 Nikhil Kumar Tomar , Debesh Jha , Ulas Bagci

Accurate endoscopic image segmentation on the polyps is critical for early colorectal cancer detection. However, this task remains challenging due to low contrast with surrounding mucosa, specular highlights, and indistinct boundaries. To…

Computer Vision and Pattern Recognition · Computer Science 2025-08-12 Juntong Fan , Shuyi Fan , Debesh Jha , Changsheng Fang , Tieyong Zeng , Hengyong Yu , Dayang Wang

This paper adresses the problem of interactive multiclass segmentation. We propose a fast and efficient new interactive segmentation method called Superpixel Classification-based Interactive Segmentation (SCIS). From a few strokes drawn by…

Computer Vision and Pattern Recognition · Computer Science 2015-10-13 Bérengère Mathieu , Alain Crouzil , Jean-Baptiste Puel

Histopathology whole slide images (WSIs) play a very important role in clinical studies and serve as the gold standard for many cancer diagnoses. However, generating automatic tools for processing WSIs is challenging due to their enormous…

Computer Vision and Pattern Recognition · Computer Science 2022-09-28 Jingwei Zhang , Xin Zhang , Ke Ma , Rajarsi Gupta , Joel Saltz , Maria Vakalopoulou , Dimitris Samaras

Pixel-wise image segmentation is a highly demanding task in medical-image analysis. In practice, it is difficult to find annotated medical images with corresponding segmentation masks. In this paper, we present Kvasir-SEG: an open-access…

Image and Video Processing · Electrical Eng. & Systems 2019-11-19 Debesh Jha , Pia H. Smedsrud , Michael A. Riegler , Pål Halvorsen , Thomas de Lange , Dag Johansen , Håvard D. Johansen

Positron Emission Tomography scan images are extensively used in radiotherapy planning, clinical diagnosis, assessment of growth and treatment of a tumor. These all rely on fidelity and speed of detection and delineation algorithm. Despite…

Medical Physics · Physics 2017-10-25 Yeman B. Hagos , Vu H. Minh , Saed Khawaldeh , Usama Pervaiz , Tajwar A. Aleef

Recent breakthroughs in object detection and image classification using Convolutional Neural Networks (CNNs) are revolutionizing the state of the art in medical imaging, and microscopy in particular presents abundant opportunities for…

Image and Video Processing · Electrical Eng. & Systems 2020-07-07 Rui Aguiar , Jon Braatz

Colorectal cancer (CRC) is one of the most common causes of cancer and cancer-related mortality worldwide. Performing colon cancer screening in a timely fashion is the key to early detection. Colonoscopy is the primary modality used to…

Image and Video Processing · Electrical Eng. & Systems 2022-06-22 Nikhil Kumar Tomar , Annie Shergill , Brandon Rieders , Ulas Bagci , Debesh Jha

In recent years, computer-aided automatic polyp segmentation and neoplasm detection have been an emerging topic in medical image analysis, providing valuable support to colonoscopy procedures. Attentions have been paid to improving the…

Image and Video Processing · Electrical Eng. & Systems 2022-03-02 Nguyen Sy An , Phan Ngoc Lan , Dao Viet Hang , Dao Van Long , Tran Quang Trung , Nguyen Thi Thuy , Dinh Viet Sang

Colonoscopy is vital in the early diagnosis of colorectal polyps. Regular screenings can effectively prevent benign polyps from progressing to CRC. While deep learning has made impressive strides in polyp segmentation, most existing models…

Image and Video Processing · Electrical Eng. & Systems 2025-04-21 Jun Zeng , KC Santosh , Deepak Rajan Nayak , Thomas de Lange , Jonas Varkey , Tyler Berzin , Debesh Jha

Segmentation of objects in microscopy images is required for many biomedical applications. We introduce object-centric embeddings (OCEs), which embed image patches such that the spatial offsets between patches cropped from the same object…

Machine Learning · Computer Science 2023-10-13 Steffen Wolf , Manan Lalit , Henry Westmacott , Katie McDole , Jan Funke

Colonoscopy is a vital tool for the early diagnosis of colorectal cancer, which is one of the main causes of cancer-related mortality globally; hence, it is deemed an essential technique for the prevention and early detection of colorectal…

Computer Vision and Pattern Recognition · Computer Science 2025-08-11 Ojonugwa Oluwafemi Ejiga Peter , Akingbola Oluwapemiisin , Amalahu Chetachi , Adeniran Opeyemi , Fahmi Khalifa , Md Mahmudur Rahman

We present the first comprehensive video polyp segmentation (VPS) study in the deep learning era. Over the years, developments in VPS are not moving forward with ease due to the lack of large-scale fine-grained segmentation annotations. To…

Image and Video Processing · Electrical Eng. & Systems 2023-03-03 Ge-Peng Ji , Guobao Xiao , Yu-Cheng Chou , Deng-Ping Fan , Kai Zhao , Geng Chen , Luc Van Gool

Automatic and accurate polyp segmentation plays an essential role in early colorectal cancer diagnosis. However, it has always been a challenging task due to 1) the diverse shape, size, brightness and other appearance characteristics of…

Image and Video Processing · Electrical Eng. & Systems 2023-01-13 Ruifei Zhang , Peiwen Lai , Xiang Wan , De-Jun Fan , Feng Gao , Xiao-Jian Wu , Guanbin Li

Colorectal polyps are generally benign alterations that, if not identified promptly and managed successfully, can progress to cancer and cause affectations on the colon mucosa, known as adenocarcinoma. Today advances in Deep Learning have…

Image and Video Processing · Electrical Eng. & Systems 2025-01-22 Daniela L. Ramos , Hector J. Hortua

With the rapid advancement of deep learning, computational pathology has made significant progress in cancer diagnosis and subtyping. Tissue segmentation is a core challenge, essential for prognosis and treatment decisions. Weakly…

Computer Vision and Pattern Recognition · Computer Science 2025-01-08 Hongyi Wu , Hong Zhang

Efficient polyp segmentation in healthcare plays a critical role in enabling early diagnosis of colorectal cancer. However, the segmentation of polyps presents numerous challenges, including the intricate distribution of backgrounds,…

Computer Vision and Pattern Recognition · Computer Science 2023-11-07 Nhat-Tan Bui , Dinh-Hieu Hoang , Quang-Thuc Nguyen , Minh-Triet Tran , Ngan Le

Vision Transformers (ViTs) have revolutionized medical imaging analysis, showcasing superior efficacy compared to conventional Convolutional Neural Networks (CNNs) in vital tasks such as polyp classification, detection, and segmentation.…

Image and Video Processing · Electrical Eng. & Systems 2024-03-11 Khaled ELKarazle , Valliappan Raman , Caslon Chua , Patrick Then