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Computer simulations of complex population genetic models are an essential tool for making sense of the large-scale datasets of multiple genome sequences from a single species that are becoming increasingly available. A widely used approach…

Populations and Evolution · Quantitative Biology 2026-04-23 Parul Johri , Fanny Pouyet , Brian Charlesworth

Current approaches in paraphrase generation and detection heavily rely on a single general similarity score, ignoring the intricate linguistic properties of language. This paper introduces two new tasks to address this shortcoming by…

Computation and Language · Computer Science 2024-07-17 Jan Philip Wahle , Bela Gipp , Terry Ruas

Large Language Models (LLMs) have recently gained significant attention due to their remarkable capabilities in performing diverse tasks across various domains. However, a thorough evaluation of these models is crucial before deploying them…

This paper investigates the reproducibility of computational science research and identifies key challenges facing the community today. It is the result of the First Summer School on Experimental Methodology in Computational Science…

Reproducibility is a cornerstone of science, as the replication of findings is the process through which they become knowledge. It is widely considered that many fields of science are undergoing a reproducibility crisis. This has led to the…

Computer Vision and Pattern Recognition · Computer Science 2022-09-13 Olivier Colliot , Elina Thibeau-Sutre , Ninon Burgos

Being able to duplicate published research results is an important process of conducting research whether to build upon these findings or to compare with them. This process is called "replicability" when using the original authors'…

Digital Libraries · Computer Science 2020-05-07 Nicolas Bonneel , David Coeurjolly , Julie Digne , Nicolas Mellado

Humans do not just find mistakes after the fact -- we often catch them mid-stream because 'reflection' is tied to the goal and its constraints. Today's large language models produce reasoning tokens and 'reflective' text, but is it…

Artificial Intelligence · Computer Science 2025-10-24 Sion Weatherhead , Flora Salim , Aaron Belbasis

Automated interpretability systems aim to reduce the need for human labor and scale analysis to increasingly large models and diverse tasks. Recent efforts toward this goal leverage large language models (LLMs) at increasing levels of…

Artificial Intelligence · Computer Science 2026-03-23 Tal Haklay , Nikhil Prakash , Sana Pandey , Antonio Torralba , Aaron Mueller , Jacob Andreas , Tamar Rott Shaham , Yonatan Belinkov

There is a well-known problem in Null Hypothesis Significance Testing: many statistically significant results fail to replicate in subsequent experiments. We show that this problem arises because standard `point-form null' significance…

Methodology · Statistics 2025-02-06 Fintan Costello , Paul Watts

The reproduction and replication of novel results has become a major issue for a number of scientific disciplines. In computer science and related computational disciplines such as systems biology, the issues closely revolve around the…

Software Engineering · Computer Science 2014-09-17 Tom Crick , Benjamin A. Hall , Samin Ishtiaq

Criticality has been proposed as a mechanism for the emergence of complexity, life, and computation, as it exhibits a balance between robustness and adaptability. In classic models of complex systems where structure and dynamics are…

Statistical Mechanics · Physics 2026-02-04 Fernanda Sánchez-Puig , Octavio Zapata , Omar K. Pineda , Gerardo Iñiguez , Carlos Gershenson

A vast array of transformative technologies developed over the past decade has enabled measurement and perturbation at ever increasing scale, yet our understanding of many systems remains limited by experimental capacity. Overcoming this…

Quantitative Methods · Quantitative Biology 2020-12-25 Brian Cleary , Aviv Regev

Empirical complex systems can be characterized not only by pairwise interactions, but also by higher-order (group) interactions influencing collective phenomena, from metabolic reactions to epidemics. Nevertheless, higher-order networks'…

Physics and Society · Physics 2026-01-01 Maxime Lucas , Luca Gallo , Arsham Ghavasieh , Federico Battiston , Manlio De Domenico

The widely claimed replicability crisis in science may lead to revised standards of significance. The customary frequentist confidence intervals, calibrated through hypothetical repetitions of the experiment that is supposed to have…

Statistics Theory · Mathematics 2020-02-11 Luigi Pace , Alessandra Salvan

A self-replicator is usually understood to be an object of definite form that promotes the conversion of materials in its environment into a nearly identical copy of itself. The challenge of engineering novel, micro- or nano-scale…

Soft Condensed Matter · Physics 2019-09-04 Sumantra Sarkar , Jeremy L. England

We study the finite-size scaling behaviour at the critical point, resulting from the addition of a homogeneous size-dependent perturbation, decaying as an inverse power of the system size. The scaling theory is first formulated in a general…

Statistical Mechanics · Physics 2023-03-06 L. Turban

We investigate replicable learning algorithms. Ideally, we would like to design algorithms that output the same canonical model over multiple runs, even when different runs observe a different set of samples from the unknown data…

Machine Learning · Computer Science 2023-04-06 Peter Dixon , A. Pavan , Jason Vander Woude , N. V. Vinodchandran

Bad statistics make research papers unreproducible and misleading. For the most part, the reasons for such misusage of numerical data have been found and addressed years ago by experts and proper practical solutions have been presented…

Other Statistics · Statistics 2020-10-26 Farzan Shenavarmasouleh , Hamid R. Arabnia

Research is facing a reproducibility crisis, in which the results and findings of many studies are difficult or even impossible to reproduce. This is also the case in machine learning (ML) and artificial intelligence (AI) research. Often,…

Machine Learning · Computer Science 2023-07-21 Harald Semmelrock , Simone Kopeinik , Dieter Theiler , Tony Ross-Hellauer , Dominik Kowald

Explanations of the replication crisis often emphasize misconduct, questionable research practices, or incentive misalignment, implying that behavioral reform is sufficient. This paper argues that a substantial component is architectural:…

Methodology · Statistics 2026-03-05 Marco Pollanen
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