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We developed a new magnetic resonance imaging method called multinuclear fingerprinting (MNF) which leverages simultaneously-acquired proton (1H) and sodium (23Na) data to generate seven quantitative maps of the whole brain: proton density…

Medical Physics · Physics 2026-05-25 Gonzalo G. Rodriguez , Zidan Yu , Lauren O'Donnell , Martijn A. Cloos , Guillaume Madelin

Purpose: Neural networks have received recent interest for reconstruction of undersampled MR acquisitions. Ideally network performance should be optimized by drawing the training and testing data from the same domain. In practice, however,…

Computer Vision and Pattern Recognition · Computer Science 2019-05-07 Salman Ul Hassan Dar , Muzaffer Özbey , Ahmet Burak Çatlı , Tolga Çukur

MRI with multiple protocols is commonly used for diagnosis, but it suffers from a long acquisition time, which yields the image quality vulnerable to say motion artifacts. To accelerate, various methods have been proposed to reconstruct…

Image and Video Processing · Electrical Eng. & Systems 2020-04-09 Bo Zhou , S. Kevin Zhou

Magnetic Resonance Fingerprinting (MRF) has emerged as a promising quantitative MR imaging approach. Deep learning methods have been proposed for MRF and demonstrated improved performance over classical compressed sensing algorithms.…

Image and Video Processing · Electrical Eng. & Systems 2022-01-27 Dongdong Chen , Mike E. Davies , Mohammad Golbabaee

The main focus of this work is a novel framework for the joint reconstruction and segmentation of parallel MRI (PMRI) brain data. We introduce an image domain deep network for calibrationless recovery of undersampled PMRI data. The proposed…

Image and Video Processing · Electrical Eng. & Systems 2021-02-03 Aniket Pramanik , Mathews Jacob

Magnetic Resonance Fingerprinting (MRF) reconstructs tissue maps based on a sequence of very highly undersampled images. In order to be able to perform MRF reconstruction, state-of-the-art MRF methods rely on priors such as the MR physics…

Image and Video Processing · Electrical Eng. & Systems 2020-10-20 Simon Arberet , Xiao Chen , Boris Mailhe , Peter Speier , Gregor Koerzdoerfer , Mathias Nittka , Heiko Meyer , Mariappan S. Nadar

Magnetic resonance Fingerprinting (MRF) is a relatively new multi-parametric quantitative imaging method that involves a two-step process: (i) reconstructing a series of time frames from highly-undersampled non-Cartesian spiral k-space data…

Image and Video Processing · Electrical Eng. & Systems 2021-07-20 Yilin Liu , Yong Chen , Pew-Thian Yap

Brain morphometry from magnetic resonance imaging (MRI) is a consolidated biomarker for many neurodegenerative diseases. Recent advances in this domain indicate that deep convolutional neural networks can infer morphometric measurements…

Image and Video Processing · Electrical Eng. & Systems 2020-09-09 Rodrigo Santa Cruz , Léo Lebrat , Pierrick Bourgeat , Vincent Doré , Jason Dowling , Jurgen Fripp , Clinton Fookes , Olivier Salvado

Magnetic resonance imaging (MRI) is one of the most commonly applied tests in neurology and neurosurgery. However, the utility of MRI is largely limited by its long acquisition time, which might induce many problems including patient…

Computer Vision and Pattern Recognition · Computer Science 2022-10-17 Xiongchao Chen , Yoshihisa Shinagawa , Zhigang Peng , Gerardo Hermosillo Valadez

Magnetic resonance imaging (MRI) is a crucial medical imaging modality. However, long acquisition times remain a significant challenge, leading to increased costs, and reduced patient comfort. Recent studies have shown the potential of…

Computer Vision and Pattern Recognition · Computer Science 2025-07-30 Amirmohammad Shamaei , Alexander Stebner , Salome , Bosshart , Johanna Ospel , Gouri Ginde , Mariana Bento , Roberto Souza

Due to the prolonged MRI encoding process, respiratory motion can cause undesired artifacts and image blurring, degrading image quality and limiting clinical applications in abdominal and pulmonary imaging. In this work, we develop a…

We propose an unsupervised convolutional neural network (CNN) for relaxation parameter estimation. This network incorporates signal relaxation and Bloch simulations while taking advantage of residual learning and spatial relations across…

Image and Video Processing · Electrical Eng. & Systems 2021-12-14 Mengze Gao , Huihui Ye , Tae Hyung Kim , Zijing Zhang , Seohee So , Berkin Bilgic

The usage of neural networks (NNs) for flow reconstruction (FR) tasks from a limited number of sensors is attracting strong research interest, owing to NNs' ability to replicate high dimensional relationships. Trained on a single flow case…

Fluid Dynamics · Physics 2024-06-19 Ali Girayhan Özbay , Sylvain Laizet

Motion artifacts are a pervasive problem in MRI, leading to misdiagnosis or mischaracterization in population-level imaging studies. Current retrospective rigid intra-slice motion correction techniques jointly optimize estimates of the…

Image and Video Processing · Electrical Eng. & Systems 2023-11-17 Nalini M. Singh , Neel Dey , Malte Hoffmann , Bruce Fischl , Elfar Adalsteinsson , Robert Frost , Adrian V. Dalca , Polina Golland

Magnetic resonance imaging (MRI) is an essential diagnostic tool that suffers from prolonged scan times. Reconstruction methods can alleviate this limitation by recovering clinically usable images from accelerated acquisitions. In…

Image and Video Processing · Electrical Eng. & Systems 2023-01-09 Salman UH Dar , Şaban Öztürk , Muzaffer Özbey , Tolga Çukur

Deep learning networks have shown promising results in fast magnetic resonance imaging (MRI) reconstruction. In our work, we develop deep networks to further improve the quantitative and the perceptual quality of reconstruction. To begin…

Magnetic Resonance Fingerprinting (MRF) methods typically rely on dictionary matching to map the temporal MRF signals to quantitative tissue parameters. These methods suffer from heavy storage and computation requirements as the dictionary…

Image and Video Processing · Electrical Eng. & Systems 2019-11-25 Dongdong Chen , Mohammad Golbabaee , Pedro A. Gomez , Marion I. Menzel , Mike E. Davies

Typical Magnetic Resonance Imaging (MRI) scan may take 20 to 60 minutes. Reducing MRI scan time is beneficial for both patient experience and cost considerations. Accelerated MRI scan may be achieved by acquiring less amount of k-space data…

Image and Video Processing · Electrical Eng. & Systems 2020-01-15 Pak Lun Kevin Ding , Zhiqiang Li , Yuxiang Zhou , Baoxin Li

Purpose: To introduce a novel deep learning method for Robust and Accelerated Reconstruction (RoAR) of quantitative and B0-inhomogeneity-corrected R2* maps from multi-gradient recalled echo (mGRE) MRI data. Methods: RoAR trains a…

Image and Video Processing · Electrical Eng. & Systems 2020-05-15 Max Torop , Satya VVN Kothapalli , Yu Sun , Jiaming Liu , Sayan Kahali , Dmitriy A. Yablonskiy , Ulugbek S. Kamilov

Magnetic resonance (MR) image acquisition is an inherently prolonged process, whose acceleration has long been the subject of research. This is commonly achieved by obtaining multiple undersampled images, simultaneously, through parallel…

Image and Video Processing · Electrical Eng. & Systems 2021-06-15 Chun-Mei Feng , Zhanyuan Yang , Huazhu Fu , Yong Xu , Jian Yang , Ling Shao