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We describe the technical effort used to process a voluminous high value human neuroimaging dataset on the Open Science Grid with opportunistic use of idle HPC resources to boost computing capacity more than 5-fold. With minimal software…

Neurons and Cognition · Quantitative Biology 2018-05-21 Don Krieger , Paul Shepard , Ben Zusman , Anirban Jana , David O. Okonkwo

Availability of large and diverse medical datasets is often challenged by privacy and data sharing restrictions. For successful application of machine learning techniques for disease diagnosis, prognosis, and precision medicine, large…

Magnetoencephalographic (MEG) recordings from a large normative cohort (n = 619) were processed to extract measures of regional neuroelectric activity. The overall objective of the effort was to use these measures to identify normative…

Neurons and Cognition · Quantitative Biology 2018-11-20 Don Krieger , Paul Shepard , David O. Okonkwo

Neurophysiology research has demonstrated that it is possible and valuable to investigate sensory processing in scenarios involving continuous sensory streams, such as speech and music. Over the past 10 years or so, novel analytic…

Deep Learning has revolutionized various fields, including Computer Vision, Natural Language Processing, as well as Biomedical research. Within the field of neuroscience, specifically in electrophysiological neuroimaging, researchers are…

Machine Learning · Computer Science 2022-04-14 Dung Truong , Manisha Sinha , Kannan Umadevi Venkataraju , Michael Milham , Arnaud Delorme

The past few years have seen remarkable progress in the decoding of speech from brain activity, primarily driven by large single-subject datasets. However, due to individual variation, such as anatomy, and differences in task design and…

Machine Learning · Computer Science 2025-06-03 Dulhan Jayalath , Gilad Landau , Brendan Shillingford , Mark Woolrich , Oiwi Parker Jones

In the pursuit to understand the intricacies of human brain's visual processing, reconstructing dynamic visual experiences from brain activities emerges as a challenging yet fascinating endeavor. While recent advancements have achieved…

Computer Vision and Pattern Recognition · Computer Science 2024-05-14 Jingyuan Sun , Mingxiao Li , Zijiao Chen , Marie-Francine Moens

Scaling data and artificial neural networks has transformed AI, driving breakthroughs in language and vision. Whether similar principles apply to modeling brain activity remains unclear. Here we leveraged a dataset of 3.1 million neurons…

Reaching a global view of brain organization requires assembling evidence on widely different mental processes and mechanisms. The variety of human neuroscience concepts and terminology poses a fundamental challenge to relating brain…

Quantitative Methods · Quantitative Biology 2020-02-24 Jérôme Dockès , Russell Poldrack , Romain Primet , Hande Gözükan , Tal Yarkoni , Fabian Suchanek , Bertrand Thirion , Gaël Varoquaux

The incorporation of neuroimaging techniques such as electroenchephalography (EEG) and functional near-infrared spectroscopy (fNIRS) has provided new opportunities for the analysis of dynamic brain processes involved in cognitive and motor…

Neurons and Cognition · Quantitative Biology 2026-03-25 Zaineb Ajra , Grégoire Vergotte , Stéphane Perrey , Lilian Evra , Simon Pla , Gérard Dray , Jacky Montmain , Binbin Xu

Background: The human mind is multimodal. Yet most behavioral studies rely on century-old measures such as task accuracy and latency. To create a better understanding of human behavior and brain functionality, we should introduce other…

Machine Learning · Computer Science 2021-11-30 Moein Razavi , Vahid Janfaza , Takashi Yamauchi , Anton Leontyev , Shanle Longmire-Monford , Joseph Orr

Current non-invasive neuroimaging techniques trade off between spatial resolution and temporal resolution. While magnetoencephalography (MEG) can capture rapid neural dynamics and functional magnetic resonance imaging (fMRI) can spatially…

Neurons and Cognition · Quantitative Biology 2025-10-13 Beige Jerry Jin , Leila Wehbe

Deep learning and large public datasets have recently catalyzed the proliferation of AI models for processing brain recordings. However, systematically evaluating these models remains a challenge: not only do the preprocessing pipelines,…

High-quality, multi-channel neural recording is indispensable for neuroscience research and clinical applications. Large-scale brain recordings often produce vast amounts of data that must be wirelessly transmitted for subsequent offline…

Hardware Architecture · Computer Science 2025-09-03 Adithya Krishna , Sohan Debnath , Madhuvanthi Srivatsav , André van Schaik , Mahesh Mehendale , Chetan Singh Thakur

Generative AI has recently propelled the decoding of images from brain activity. How do these approaches scale with the amount and type of neural recordings? Here, we systematically compare image decoding from four types of non-invasive…

Image and Video Processing · Electrical Eng. & Systems 2025-01-29 Hubert Banville , Yohann Benchetrit , Stéphane d'Ascoli , Jérémy Rapin , Jean-Rémi King

We present a new large-scale electroencephalography (EEG) dataset as part of the THINGS initiative, comprising over 1.6 million visual stimulus trials collected from 20 participants, and totaling more than twice the size of the most popular…

Neurons and Cognition · Quantitative Biology 2025-08-28 Jonathan Xu , Ugo Bruzadin Nunes , Wangshu Jiang , Samuel Ryther , Jordan Pringle , Paul S. Scotti , Arnaud Delorme , Reese Kneeland

This paper presents a comprehensive and quality collection of functional human brain network data for potential research in the intersection of neuroscience, machine learning, and graph analytics. Anatomical and functional MRI images have…

Functional MRI (fMRI) is a powerful technique that has allowed us to characterize visual cortex responses to stimuli, yet such experiments are by nature constructed based on a priori hypotheses, limited to the set of images presented to the…

Neurons and Cognition · Quantitative Biology 2021-05-18 Zijin Gu , Keith W. Jamison , Meenakshi Khosla , Emily J. Allen , Yihan Wu , Thomas Naselaris , Kendrick Kay , Mert R. Sabuncu , Amy Kuceyeski

Neurophysiological studies are typically conducted in laboratories with limited ecological validity, scalability, and generalizability of findings. This is a significant challenge for the development of brain-computer interfaces (BCIs),…

Dream2Image is the world's first dataset combining EEG signals, dream transcriptions, and AI-generated images. Based on 38 participants and more than 31 hours of dream EEG recordings, it contains 129 samples offering: the final seconds of…

Neurons and Cognition · Quantitative Biology 2025-10-09 Yann Bellec
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