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Biological systems are driven by intricate interactions among the complex array of molecules that comprise the cell. Many methods have been developed to reconstruct network models of those interactions. These methods often draw on large…

Molecular Networks · Quantitative Biology 2018-06-29 Marieke Lydia Kuijjer , Matthew Tung , GuoCheng Yuan , John Quackenbush , Kimberly Glass

Network data are ubiquitous in modern machine learning, with tasks of interest including node classification, node clustering and link prediction. A frequent approach begins by learning an Euclidean embedding of the network, to which…

Machine Learning · Statistics 2023-05-18 Andrew Davison , Morgane Austern

A key requirement for graph neural networks is that they must process a graph in a way that does not depend on how the graph is described. Traditionally this has been taken to mean that a graph network must be equivariant to node…

Machine Learning · Computer Science 2020-11-24 Pim de Haan , Taco Cohen , Max Welling

Many learning problems involve symmetries, and while invariance can be built into neural architectures, it can also emerge implicitly when training on group-structured data. We study this phenomenon in classical Hopfield networks and show…

Machine Learning · Computer Science 2026-01-21 Michael Murray , Tenzin Chan , Kedar Karhadker , Christopher J. Hillar

In statistical network analysis, models for binary adjacency matrices satisfying vertex exchangeability are commonly used. However, such models may fail to capture key features of the data-generating process when interactions, rather than…

Methodology · Statistics 2025-09-03 Ayoushman Bhattacharya , Nilanjan Chakraborty , Robert Lunde

How does the shape of a network change as its size increases? Although random graph models provide some expectations for such "scaling behaviors" in the structure of networks, relatively little is known about how empirical network structure…

Social and Information Networks · Computer Science 2026-03-24 Upasana Dutta , Alexander Ray , Aaron Clauset

Large graphs are sometimes studied through their degree sequences (power law or regular graphs). We study graphs that are uniformly chosen with a given degree sequence. Under mild conditions, it is shown that sequences of such graphs have…

Probability · Mathematics 2011-08-31 Sourav Chatterjee , Persi Diaconis , Allan Sly

Here we present the entropic dynamics formalism for networks. That is, a framework for the dynamics of graphs meant to represent a network derived from the principle of maximum entropy and the rate of transition is obtained taking into…

Physics and Society · Physics 2021-04-29 Felipe Xavier Costa , Pedro Pessoa

Learning representations that capture the underlying data generating process is a key problem for data efficient and robust use of neural networks. One key property for robustness which the learned representation should capture and which…

Machine Learning · Computer Science 2022-06-24 Mathieu Chevalley , Charlotte Bunne , Andreas Krause , Stefan Bauer

A network can be analyzed at different topological scales, ranging from single nodes to motifs, communities, up to the complete structure. We propose a novel intermediate-level topological analysis that considers non-overlapping subgraphs…

Computational Physics · Physics 2009-11-13 Lucas Antiqueira , Luciano da Fontoura Costa

A new scheme to sample signals defined in the nodes of a graph is proposed. The underlying assumption is that such signals admit a sparse representation in a frequency domain related to the structure of the graph, which is captured by the…

Social and Information Networks · Computer Science 2016-04-20 Antonio G. Marques , Santiago Segarra , Geert Leus , Alejandro Ribeiro

We consider the problem of offline, pool-based active semi-supervised learning on graphs. This problem is important when the labeled data is scarce and expensive whereas unlabeled data is easily available. The data points are represented by…

Machine Learning · Computer Science 2014-05-20 Akshay Gadde , Aamir Anis , Antonio Ortega

We present a framework to define a large class of neural networks for which, by construction, training by gradient flow provably reaches arbitrarily low loss when the number of parameters grows. Distinct from the fixed-space global…

Optimization and Control · Mathematics 2025-01-13 David A. R. Robin , Kevin Scaman , Marc Lelarge

We study the statistical properties of large random networks with specified degree distributions. New techniques are presented for analyzing the structure of social networks. Specifically, we address the question of how many nodes exist at…

Physics and Society · Physics 2007-05-23 Erik Volz

In the past few years, the storage and analysis of large-scale and fast evolving networks present a great challenge. Therefore, a number of different techniques have been proposed for sampling large networks. In general, network exploration…

Social and Information Networks · Computer Science 2015-06-10 Neli Blagus , Lovro Šubelj , Marko Bajec

We revisit a simple model class for machine learning on graphs, where a random walk on a graph produces a machine-readable record, and this record is processed by a deep neural network to directly make vertex-level or graph-level…

Machine Learning · Computer Science 2025-03-06 Jinwoo Kim , Olga Zaghen , Ayhan Suleymanzade , Youngmin Ryou , Seunghoon Hong

Statistical analysis of social networks provides valuable insights into complex network interactions across various scientific disciplines. However, accurate modeling of networks remains challenging due to the heavy computational burden and…

Social and Information Networks · Computer Science 2023-07-25 Helal El-Zaatari , Fei Yu , Michael R Kosorok

We consider dynamical and geometrical aspects of deep learning. For many standard choices of layer maps we display semi-invariant metrics which quantify differences between data or decision functions. This allows us, when considering random…

Machine Learning · Computer Science 2021-04-23 Benny Avelin , Anders Karlsson

Models of complex networks are generally defined as graph stochastic processes in which edges and vertices are added or deleted over time to simulate the evolution of networks. Here, we define a unifying framework - probabilistic inductive…

Dynamical Systems · Mathematics 2010-11-10 Nataša Kejžar , Zoran Nikoloski , Vladimir Batagelj

The success of Large Language Models (LLMs) in various domains has led researchers to apply them to graph-related problems by converting graph data into natural language text. However, unlike graph data, natural language inherently has…

Machine Learning · Computer Science 2025-02-13 Xu Chu , Hanlin Xue , Zhijie Tan , Bingce Wang , Tong Mo , Weiping Li
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