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Throughout developmental biology and ecology, transport can be driven by nonlocal interactions. Examples include cells that migrate based on contact with pseudopodia extended from other cells, and animals that move based on their vision of…

Pattern Formation and Solitons · Physics 2023-07-07 Thomas Jun Jewell , Andrew L. Krause , Philip K. Maini , Eamonn A. Gaffney

The study of pattern emergence together with exploration of the exemplar Turing model is enjoying a renaissance both from theoretical and experimental perspective. Here, we implement a stability analysis of spatially dependent reaction…

Pattern Formation and Solitons · Physics 2019-11-06 Michal Kozák , Eamonn A Gaffney , Václav Klika

We study chemical pattern formation in a fluid between two flat plates and the effect of such patterns on the formation of convective cells. This patterning is made possible by assuming the plates are chemically reactive or release reagents…

Fluid Dynamics · Physics 2023-11-07 Aiden Huffman , Henry Shum

Pattern formation in biological tissues plays an important role in the development of living organisms. Since the classical work of Alan Turing, a pre-eminent way of modelling has been through reaction-diffusion mechanisms. More recently,…

Analysis of PDEs · Mathematics 2023-01-27 Alexey Kazarnikov , Robert Scheichl , Heikki Haario , Anna Marciniak-Czochra

The theory of patterns formation for a reaction-diffusion system defined on a multiplex is developed by means of a perturbative approach. The intra-layer diffusion constants act as small parameter in the expansion and the unperturbed state…

Statistical Mechanics · Physics 2015-06-22 Malbor Asllani , Daniel M. Busiello , Timoteo Carletti , Duccio Fanelli , Gwendoline Planchon

Many cephalopods such as octopus and squid change their skin color purposefully within a very short time. Furthermore, it is widely known that some octopuses have the ability to change the color and unevenness of the skin and to mimic the…

Quantitative Methods · Quantitative Biology 2021-09-03 Takeshi Ishida

Pattern formation is ubiquitous in nature and the mechanism widely-accepted to underlay them is based on the Turing instability, predicted by Alan Turing decades ago. This is a non-trivial mechanism that involves nonlinear interaction terms…

Pattern Formation and Solitons · Physics 2024-12-19 Javier López-Pedrares , Marcos Suárez-Vázquez , Juan Pérez-Mercader , Alberto P. Muñuzuri

We propose conditions for the emergence of Turing patterns in a domain that changes in size by homogeneous growth/shrinkage. These conditions to determine the bifurcation are based on considering the geometric change of a potential function…

Pattern Formation and Solitons · Physics 2023-08-25 Aldo Ledesma-Durán

Since its introduction in 1952, Turing's (pre-)pattern theory ("the chemical basis of morphogenesis") has been widely applied to a number of areas in developmental biology. The related pattern formation models normally comprise a system of…

Cell Behavior · Quantitative Biology 2020-10-28 Fiona R Macfarlane , Mark AJ Chaplain , Tommaso Lorenzi

Hyperbolic reaction-diffusion equations have recently attracted attention both for their application to a variety of biological and chemical phenomena, and for their distinct features in terms of propagation speed and novel instabilities…

Pattern Formation and Solitons · Physics 2022-08-17 Joshua Ritchie , Andrew L. Krause , Robert A. Van Gorder

Motivated by bacterial chemotaxis and multi-species ecological interactions in heterogeneous environments, we study a general one-dimensional reaction-cross-diffusion system in the presence of spatial heterogeneity in both transport and…

Pattern Formation and Solitons · Physics 2023-03-08 Eamonn A. Gaffney , Andrew L. Krause , Philip K. Maini , Chenyuan Wang

Reaction-diffusion systems with time-delay defined on complex networks have been studied in the framework of the emergence of Turing instabilities. The use of the Lambert W-function allowed us get explicit analytic conditions for the onset…

Statistical Mechanics · Physics 2016-08-03 Julien Petit , Malbor Asllani , Duccio Fanelli , Ben Lauwens , Timoteo Carletti

In this work we investigate the process of pattern formation in a two dimensional domain for a reaction-diffusion system with nonlinear diffusion terms and the competitive Lotka-Volterra kinetics. The linear stability analysis shows that…

Pattern Formation and Solitons · Physics 2014-03-03 G. Gambino , M. C. Lombardo , M. Sammartino

Originating from the pioneering study of Alan Turing, the bifurcation analysis predicting spatial pattern formation from a spatially uniform state for diffusing morphogens or chemical species that interact through nonlinear reactions is a…

Pattern Formation and Solitons · Physics 2023-01-18 Merlin Pelz , Michael J. Ward

This paper studies how patterns derived from a system of reaction-diffusion equations may vary significantly depending upon boundary and initial conditions, as well as in the spatial dependence of the coefficients involved. From an…

Subcellular Processes · Quantitative Biology 2016-01-06 Aldo Ledesma-Durán , Héctor Juárez-Valencia , Iván Santamaría-Holek

The Turing pattern model is one type of reaction-diffusion (RD) model. The first identification of pattern formation by the Turing pattern model in an actual animal was made in the 1990s with the observation of patterns in the sea anemone.…

Quantitative Methods · Quantitative Biology 2023-08-15 Takeshi Ishida

Turing patterns play a fundamental role in morphogenesis and population dynamics, encoding key information about the underlying biological mechanisms. Yet, traditional inverse problems have largely relied on non-biological data such as…

Analysis of PDEs · Mathematics 2025-09-10 Yuhan Li , Hongyu Liu , Catharine W. K. Lo

Models of diffusion driven pattern formation that rely on the Turing mechanism are utilized in many areas of science. However, many such models suffer from the defect of requiring fine tuning of parameters or an unrealistic separation of…

Other Quantitative Biology · Quantitative Biology 2015-03-17 Thomas Butler , Nigel Goldenfeld

Patterns in reaction-diffusion systems often contain two spatial scales; a long scale determined by a typical wavelength or domain size, and a short scale pertaining to front structures separating different domains. Such patterns naturally…

patt-sol · Physics 2009-10-22 Aric Hagberg , Ehud Meron

The biopolymers actin and microtubules are often in an ongoing assembling/disassembling state far from thermal equilibrium. Above a critical density this leads to spatially periodic patterns, as shown by a scaling argument and in terms of a…

Soft Condensed Matter · Physics 2007-05-23 Falko Ziebert , Walter Zimmermann