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Neural manifolds summarize the intrinsic structure of the information encoded by a population of neurons. Advances in experimental techniques have made simultaneous recordings from multiple brain regions increasingly commonplace, raising…

Neurons and Cognition · Quantitative Biology 2025-03-27 Iris H. R. Yoon , Gregory Henselman-Petrusek , Yiyi Yu , Robert Ghrist , Spencer LaVere Smith , Chad Giusti

Recent advances and reflections on reproducible human neuroscience, especially brain-wide association studies (BWAS) leveraging large datasets, have led to divergent and sometimes opposing views on research practices and priorities. The…

Neurons and Cognition · Quantitative Biology 2025-12-30 Zi-Xuan Zhou , Xi-Nian Zuo

Understanding neurocognitive computations will require not just localizing cognitive information distributed throughout the brain but also determining how that information got there. We review recent advances in linking empirical and…

Neurons and Cognition · Quantitative Biology 2019-10-22 Takuya Ito , Luke Hearne , Ravi Mill , Carrisa Cocuzza , Michael W. Cole

Predictive coding offers a potentially unifying account of cortical function -- postulating that the core function of the brain is to minimize prediction errors with respect to a generative model of the world. The theory is closely related…

Artificial Intelligence · Computer Science 2022-07-14 Beren Millidge , Anil Seth , Christopher L Buckley

Two universal functional principles of Adaptive Resonance Theory simulate the brain code of all biological learning and adaptive intelligence. Low level representations of multisensory stimuli in their immediate environmental context are…

Neurons and Cognition · Quantitative Biology 2023-03-06 Birgitta Dresp-Langley

A population of firing neurons is expected to carry information not only by mean firing rate but also by fluctuation and synchrony among neurons. In order to examine this possibility, we have studied responses of neuronal ensembles to three…

Neurons and Cognition · Quantitative Biology 2009-11-13 Hideo Hasegawa

This perspective piece is the result of a Generative Adversarial Collaboration (GAC) tackling the question `How does neural activity represent probability distributions?'. We have addressed three major obstacles to progress on answering…

Neurons and Cognition · Quantitative Biology 2024-09-05 Ralf M. Haefner , Jeff Beck , Cristina Savin , Mehrdad Salmasi , Xaq Pitkow

Expectations can substantially influence perception. Predictive coding is a theory of sensory processing that aims to explain the neural mechanisms underlying the effect of expectations in sensory processing. Its main assumption is that…

Neurons and Cognition · Quantitative Biology 2022-11-24 Jasmin Stein , Katharina von Kriegstein , Alejandro Tabas

A neuron transforms its input into output spikes, and this transformation is the basic unit of computation in the nervous system. The spiking response of the neuron to a complex, time-varying input can be predicted from the detailed…

Neurons and Cognition · Quantitative Biology 2011-12-19 Michael Famulare , Adrienne Fairhall

The counting task, which plays a fundamental role in numerous applications (e.g., crowd counting, traffic statistics), aims to predict the number of objects with various densities. Existing object counting tasks are designed for a single…

Computer Vision and Pattern Recognition · Computer Science 2023-07-03 Shengqin Jiang , Qing Wang , Fengna Cheng , Yuankai Qi , Qingshan Liu

Coded recurrent neural networks with three levels of sparsity are introduced. The first level is related to the size of messages, much smaller than the number of available neurons. The second one is provided by a particular coding rule,…

Machine Learning · Computer Science 2011-02-22 Vincent Gripon , Claude Berrou

Visual encoding and decoding models act as gateways to understanding the neural mechanisms underlying human visual perception. Typically, visual encoding models that predict brain activity from stimuli and decoding models that reproduce…

Machine Learning · Computer Science 2026-04-14 Weijian Mai , Mu Nan , Yu Zhu , Jiahang Cao , Rui Zhang , Yuqin Dai , Chunfeng Song , Andrew F. Luo , Jiamin Wu

Recent advances in general-purpose AI systems with attention-based transformers offer a potential window into how the neocortex and cerebellum, despite their relatively uniform circuit architectures, give rise to diverse functions and,…

Neurons and Cognition · Quantitative Biology 2025-12-03 Shogo Ohmae , Keiko Ohmae

The prediction of odor characters is still impossible based on the odorant molecular structure. We designed a CNN-based regressor for computed parameters in molecular vibrations (CNN\_vib), in order to investigate the ability to predict…

Chemical Physics · Physics 2025-09-23 Yuki Harada , Shuichi Maeda , Junwei Shen , Taku Misonou , Hirokazu Hori , Shinichiro Nakamura

Modern recording technologies now enable simultaneous recording from large numbers of neurons. This has driven the development of new statistical models for analyzing and interpreting neural population activity. Here we provide a broad…

Neurons and Cognition · Quantitative Biology 2021-07-13 Cole Hurwitz , Nina Kudryashova , Arno Onken , Matthias H. Hennig

To maximize future rewards in this ever-changing world, animals must be able to discover the temporal structure of stimuli and then anticipate or act correctly at the right time. How the animals perceive, maintain, and use time intervals…

Neurons and Cognition · Quantitative Biology 2020-07-08 Zedong Bi , Changsong Zhou

Behavioral experiments on humans and animals suggest that the brain performs probabilistic inference to interpret its environment. Here we present a new general-purpose, biologically-plausible neural implementation of approximate inference.…

Neurons and Cognition · Quantitative Biology 2016-05-24 Rajkumar Vasudeva Raju , Xaq Pitkow

Visual brain decoding aims to decode visual information from human brain activities. Despite the great progress, one critical limitation of current brain decoding research lies in the lack of generalization capability to unseen subjects.…

Computer Vision and Pattern Recognition · Computer Science 2024-10-22 Xiangtao Kong , Kexin Huang , Ping Li , Lei Zhang

Living systems, from single cells to higher vertebrates, receive a continuous stream of non-stationary inputs that they sense, e.g., via cell surface receptors or sensory organs. Integrating these time-varying, multi-sensory, and often…

Other Quantitative Biology · Quantitative Biology 2024-04-17 Daniel Koch , Akhilesh Nandan , Gayathri Ramesan , Aneta Koseska

Auditory working memory is essential for various daily activities, such as language acquisition, conversation. It involves the temporary storage and manipulation of information that is no longer present in the environment. While extensively…

Sound · Computer Science 2025-03-18 Zhongju Yuan , Geraint Wiggins , Dick Botteldooren